The CAFA6 Challenge: predicting protein function from sequence
My strategy involves a dual towers network approach
Genomics, Machine Learning, and Data for Bioinformatics
GMD Bioinformatics - from dalloliogm
Subscribe:.rss.atom.json.md.m3u.pls
Live Last read · last published · next check
Latest episodes
Arc Virtual Cell Challenge - part 4: Winners announced!
Did Bio-Foundation models outperform traditional statistical approaches?
New preprint: Multi-agent AI enables evidence-based cell annotation in single-cell transcriptomics
The paper on CyteType is on bioArXiv!
Arc Virtual Cell Challenge part 3: how to train your own Virtual Cell Model
Let's go through the example notebook on running STATE, Arc's Virtual Cell model.
Arc Virtual Cell Challenge part 2: What the Leaderboard Collapse Reveals About Model Evaluation
Some participants have already found a way to hack the score, exposing fundamental flaws in how bio-foundation models are evaluated.
Arc Virtual Cell Challenge part 1: my diary
A journey into bio-foundation models to predict perturbations in single-cell data
My Kaggle Playground competitions in 2025
Kaggle runs a series of Playground competitions designed to help people learn and practice machine learning in a fun, low-stakes environment.
Book review: The Breakthrough
A book about the history of Immunotherapy in Oncology.
Book Review: Empire of AI - by Karen Hao
The story of OpenAI, ChatGPT, and the impact on our society
Times Tables Animals
My 8yo son and I "vibe-coded" a maths game featuring cute animals