altair-upset: The Evolution of UpSet plots in Altair
How I turned a Jupyter notebook into a full-fledged Python package for UpSet plots
Edmund Miller
Bioinformatics engineer and PhD candidate writing about Nextflow, nf-core, functional genomics, reproducible workflows, and software for data-intensive science.
Latest posts
Migration from Biocontainers to Seqera Containers: Part 2
nf-core containers automation: how it'll all work behind the curtain
Migration from Biocontainers to Seqera Containers: Part 1
What Seqera Containers is and why we want to move to it.
Pixi for Bioinformatics: Bioconda on HPC and Local Machines
Set up Pixi with conda-forge and Bioconda on an HPC cluster or laptop, install Nextflow, define tasks, and import an existing environment.yml.
Format Snakemake in Emacs with Apheleia and snakefmt
Configure Apheleia in Doom Emacs to format Snakemake files with snakefmt, including a Nix package and the exact set-formatter! setup.
Nextflow Emacs Workflow
How I hack on Nextflow scripts using Emacs
Setting up Doom Emacs for Astro Development
The beauty of Astro is it's like the Nextflow of web frameworks
Personal Site Analytics in 2024
What's the move for something that gives you feedback and isn't creepy
Encrypt org-journal with age in Doom Emacs
Set up age.el and rage in Doom Emacs, configure SSH key paths, and save org-journal entries as encrypted .org.age files when EasyPG hangs.
Site v3
Or is it like v5 at this point?
I'm Starting a Writing Streak
We'll see how long it lasts this time!
Why I'm hyped about Julia for Bioinformatics
Julia might just change the game for bioinformatics.
Thoughts on NixOS
Highlighting its customization, stability, and how it simplifies development environments.
A New Vue on Life
I've been wanting to redo my personal site since I tried to add my presentations to my hugo based site and struggled.
Learn Just Enough React to Move Out of your Parent\'s House
A Gen-Z's Guide to the 2019 Job Market.
Emacs Email Config
Setting up Email in Emacs with mbsync, and Notmuch.
CTRL to Caps Lock
How to change your Capslock key to Ctrl. With a bonus ESC on tap.