Package: nprcgenekeepr 2.0.0.9000

nprcgenekeepr: Genetic Tools for Colony Management

Provides genetic tools for colony management and is a derivation of the work in Amanda Vinson and Michael J Raboin (2015) <https://pmc.ncbi.nlm.nih.gov/articles/PMC4671785/> "A Practical Approach for Designing Breeding Groups to Maximize Genetic Diversity in a Large Colony of Captive Rhesus Macaques ('Macaca' 'mulatta')". It provides a 'Shiny' application with an exposed API. The application supports five groups of functions: (1) Quality control of studbooks contained in text files or 'Excel' workbooks and of pedigrees within 'LabKey' Electronic Health Records (EHR); (2) Creation of pedigrees from a list of animals using the 'LabKey' EHR integration; (3) Creation and display of an age by sex pyramid plot of the living animals within the designated pedigree; (4) Generation of genetic value analysis reports; and (5) Creation of potential breeding groups with and without proscribed sex ratios and defined maximum kinships.

Authors:Michael Raboin [aut], Terry Therneau [aut], Amanda Vinson [aut, dtc], R. Mark Sharp [aut, cre, cph, dtc], Matthew Schultz [aut], Southwest National Primate Research Center NIH grant P51 RR13986 [fnd], Oregon National Primate Research Center grant P51 OD011092 [fnd]

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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nprcgenekeepr/json (API)

# Install 'nprcgenekeepr' in R:

install.packages('nprcgenekeepr', repos = c('https://rmsharp.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rmsharp/nprcgenekeepr/issues

Pkgdown/docs site:https://rmsharp.github.io

Datasets:

exampleNprcgenekeeprConfig - Example nprcgenekeepr configuration file
examplePedigree - Example pedigree object
finalRpt - Genetic-value report list prior to ranking
focalAnimals - Focal animal IDs from examplePedigree
lacy1989Ped - Small hypothetical pedigree
lacy1989PedAlleles - Gene-drop alleles for lacy1989Ped
ped1Alleles - Gene-drop alleles example
pedDuplicateIds - Example studbook with a duplicated record
pedFemaleSireMaleDam - Example studbook with sex-mismatched parents
pedGood - Valid example studbook
pedInvalidDates - Example studbook with invalid birth dates
pedMissingBirth - Example studbook missing the birth date column
pedOne - Raw pedigree-file fragment for testing
pedSameMaleIsSireAndDam - Example studbook with a male as both sire and dam
pedSix - Raw pedigree-file fragment for testing
pedWithGenotype - Pedigree with simulated genotypes
pedWithGenotypeReport - Genetic-value report for pedWithGenotype
qcBreeders - Potential breeder IDs
qcPed - Example quality-controlled baboon pedigree
qcPedGvReport - Genetic-value report for qcPed
rhesusGenotypes - Rhesus genotypes
rhesusPedigree - Obfuscated rhesus pedigree object
smallPed - Hypothetical 17-animal pedigree
smallPedTree - Pedigree tree built from smallPed
speciesGestation - Per-species reproductive parameters

On CRAN:

6.98 score 397 scripts 311 downloads 218 exports 94 dependencies

Last updated from:0992053e85. Checks:6 ERROR, 2 OK, 1 NOTE. Indexed: yes.
A new build is currently in progress.

Target	Result	Time
linux-devel	ERROR	428
source / vignettes	OK	347
linux-release	ERROR	429
macos-release	NOTE	234
macos-oldrel	ERROR	392
windows-devel	ERROR	391
windows-release	ERROR	402
windows-oldrel	ERROR	408
wasm-release	OK	177

Exports:addAnimalsWithNoRelative addBackSecondParents addGenotype addIdRecords addParents addSexAndAgeToGroup addUIds alleleFreq applyKinshipOverrides appServer appUI assignAlleles buildMarkerGenotypeMatrix calcA calcAge calcFE calcFEFG calcFG calcFGSE calcGeneDiversity calcGU calcGUSE calcKurtosis calcNeSexRatio calcNeVariance calcRetention calcSkewness calculateSexRatio checkChangedColsLst checkCrossCenterMapping checkErrorLst checkGenotypeFile checkKinshipOverrides checkLinkageMarkerGenotypeFile checkLocusMetadata checkMarkerGenotypeFile checkParentAge checkRequiredCols checkSequenceGenotypeFile checkTwinRelations chooseAlleles chooseDate computeGenomicROH convertAncestry convertDate convertFromCenter convertRelationships convertSexCodes convertStatusCodes correctParentSex countFirstOrder countKinshipValues countLoops create_wkbk createExampleFiles createPedTree createSimKinships cumulateSimKinships dataframe2string fillGroupMembersWithSexRatio filterKinMatrix filterPairs filterReport filterThreshold findGeneration findLoops findOffspring findPedigreeNumber fixColumnNames geneDrop get_and_or_list get_elapsed_time_str getAncestors getAnimalsWithHighKinship getAutoIdFormat getBoxWhiskerDescription getChangedColsTab getConfigFileName getCurrentAge getDatedFilename getDateErrorsAndConvertDatesInPed getDemographics getDescendantPedigree getEmptyErrorLst getErrorTab getFileDirectRelatives getFocalAnimalPed getFocalAnimalPedFromFile getFounders getGeneticDiversityStats getGenotypes getGVGenotype getGVPopulation getIdsWithOneParent getIncludeColumns getLkDirectAncestors getLkDirectRelatives getOffspring getParents getPedDirectRelatives getPedigree getPedMaxAge getPossibleCols getPotentialParents getPotentialSires getProbandPedigree getPyramidAgeDist getPyramidPlot getRequiredCols getSiteInfo getSpeciesGestation getSpeciesMinBreedingAge getTokenList getVersion groupAddAssign gvaConvergence hasBothParents hasGenotype headerDisplayNames is_valid_date_str isFounder kinMatrix2LongForm kinship kinshipMatricesToKValues kinshipMatrixToKValues loadSiteConfig loadSpeciesOverrides logModuleEvent makeCEPH makeExamplePedigreeFile makeFounderStatsTable makeGeneticDiversityHeatmap makeGeneticSummaryTable makeGroupMembers makeGroupNum makeGrpNum makePedigreeDiagramData makePedigreeMatingLayout makeRelationClassesTable makeSimPed mapIdsToObfuscated markerExpectedHeterozygosity markerFst markerKinship markerLdBlock markerObservedHeterozygosity markerParentageExclusion markerParentageLikelihood markerRealizedRelatednessVariance meanKinship modBreedingGroupsServer modBreedingGroupsUI modCrossCenterIdentityServer modCrossCenterIdentityUI modDeidentifiedExportServer modDeidentifiedExportUI modGeneticDiversityServer modGeneticDiversityUI modGeneticValueServer modGeneticValueUI modGvAndBgDescServer modGvAndBgDescUI modInputServer modInputUI modMarkerGeneticsServer modMarkerGeneticsUI modMatePairServer modMatePairUI modORIPReportingServer modORIPReportingUI modPedigreeServer modPedigreeUI modPotentialParentsServer modPotentialParentsUI modPyramidServer modPyramidUI modSummaryStatsServer modSummaryStatsUI obfuscateDate obfuscateGenomicROH obfuscateGenotypeMatrix obfuscateId obfuscateLdBlocks obfuscatePed obfuscateTwinRelations offspringCounts processQcStudbookResult qcStudbook rankSubjects readKinshipOverrides readTwinRelations removeAutoGenIds removeDuplicates removeEarlyDates removePotentialSires removeUninformativeFounders removeUnknownAnimals reportGV reportMatePairs resolveCrossCenterIds runGeneKeepR runModularApp runQcStudbook safeExecute saveDataframesAsFiles savePlotToFile set_seed setAutoIdFormat setExit setLabKeyDefaults setPopulation shouldShowChangedColsTab shouldShowOripTab shrinkPedigree summarizeKinshipValues toCharacter trimPedigree withinIntegerRange

Dependencies:anytime askpass backports base64enc BH bit bit64 bslib cachem cellranger checkmate cli commonmark cpp11 crayon crosstalk curl data.table digest DT evaluate farver fastmap fontawesome formatR fs futile.logger futile.options generics ggplot2 glue gtable highr hms htmlTable htmltools htmlwidgets httpuv httr isoband jquerylib jsonlite knitr labeling lambda.r later lattice lazyeval lifecycle lubridate magrittr Matrix memoise mime openssl openxlsx otel pillar pkgconfig plotrix prettyunits progress promises R6 rappdirs RColorBrewer Rcpp readxl rematch Rlabkey rlang rmarkdown rstudioapi S7 sass scales sessioninfo shiny sourcetools stringi stringr sys tibble timechange tinytex utf8 vctrs viridisLite visNetwork withr xfun xtable yaml zip

Interactive Use of nprcgenekeepr

Rendered froma2interactive.Rmdusingknitr::rmarkdown_notangle

Last update: 2026-08-14
Started: 2020-04-14

Quick Example of Simulated Kinships with Partial Parentage

Introduction | Anticipation of further uses of this kinship estimation method | Identification of potential parents | Creation of example pedigree[^not-realistic] | Small Example

Rendered fromsimulatedKValues.Rmdusingknitr::rmarkdown_notangle

Last update: 2026-07-16
Started: 2024-12-18

Gene-Drop Iteration Convergence

How many gene-drop iterations does a pedigree need? | What it measures | A pedigree where the iteration count matters | A pedigree that converges immediately | Choosing an iteration count

Rendered fromgvaConvergence.Rmdusingknitr::rmarkdown_notangle

Last update: 2026-07-16
Started: 2026-06-25

Genetic Management Tools Manual

Rendered froma3manual.Rmdusingknitr::knitr

Last update: 2020-04-14
Started: 2020-04-14

Help page	Topics
Add an NA value for animals with no relative	addAnimalsWithNoRelative
Add back single parents trimmed pedigree	addBackSecondParents
Add genotype data to pedigree file	addGenotype
Add ego records with NA parent IDs	addIdRecords
Add parents	addParents
Build a group data frame with ID, sex, and age	addSexAndAgeToGroup
Add placeholder IDs for unknown parents	addUIds
Count each allele in a vector	alleleFreq
Apply outside-information kinship overrides to a kinship matrix	applyKinshipOverrides
Main Application Server for nprcgenekeepr	appServer
Main Application UI for nprcgenekeepr	appUI
Assign parent alleles randomly	assignAlleles
Pivot a long-format marker genotype table into a wide genotype matrix	buildMarkerGenotypeMatrix
Count each individual's rare alleles per simulation	calcA
Calculate animal ages	calcAge
Calculate founder equivalents	calcFE
Calculate founder equivalents and founder genome equivalents	calcFEFG
Calculate founder genome equivalents	calcFG
Calculate the standard error of founder genome equivalents	calcFGSE
Calculate gene diversity from founder genome equivalents	calcGeneDiversity
Calculate genome uniqueness for each population ID	calcGU
Calculate the standard error of genome uniqueness	calcGUSE
Calculate bias-adjusted sample excess kurtosis	calcKurtosis
Calculate the demographic sex-ratio effective population size	calcNeSexRatio
Calculate the variance effective population size	calcNeVariance
Calculate allelic retention	calcRetention
Calculate bias-adjusted sample skewness	calcSkewness
Calculate the sex ratio of a set of animals	calculateSexRatio
Check a changed-columns list for non-empty fields	checkChangedColsLst
Collect every cross-center identity-mapping problem, without stopping	checkCrossCenterMapping
Check an error list for non-empty fields	checkErrorLst
Check genotype file	checkGenotypeFile
Validate a kinship overrides table	checkKinshipOverrides
Check a long-format multi-locus marker genotype file, multiallelic-tolerant	checkLinkageMarkerGenotypeFile
Check a locus-metadata sidecar table and classify per-locus coverage	checkLocusMetadata
Check a long-format multi-locus marker genotype file	checkMarkerGenotypeFile
Check parent ages against a minimum age	checkParentAge
Check column names for required columns	checkRequiredCols
Check a long-format sequence-derived marker genotype file	checkSequenceGenotypeFile
Validate a twin/zygosity relations table	checkTwinRelations
Combine two allele vectors by Mendelian sampling	chooseAlleles
Choose the earlier or later of two dates	chooseDate
Compute genomic Runs of Homozygosity (ROH) and F_ROH	computeGenomicROH
Convert ancestry information to a standard code	convertAncestry
Convert character date columns to Date type	convertDate
Convert from-center information to a logical value	convertFromCenter
Convert pairwise kinship values to relationship categories	convertRelationships
Convert a sex indicator to a standardized code	convertSexCodes
Convert status indicators to a standardized code	convertStatusCodes
Correct the sex of animals listed as a sire or dam	correctParentSex
Count first-order relatives	countFirstOrder
Count kinship-value occurrences across simulated pedigrees	countKinshipValues
Count the number of loops in a pedigree tree	countLoops
Create an Excel workbook with worksheets	create_wkbk
Create example pedigree and ID-list CSV files	createExampleFiles
Create a pedigree tree (PedTree)	createPedTree
Build kinship matrices from simulated pedigrees	createSimKinships
Compute kinship summary statistics across simulations	cumulateSimKinships
Convert a data frame to a character vector	dataframe2string
Example nprcgenekeepr configuration file (loadable)	exampleNprcgenekeeprConfig
Example pedigree object (from ExamplePedigree.csv)	examplePedigree
Form breeding groups to match a target sex ratio	fillGroupMembersWithSexRatio
Filter a kinship matrix to selected IDs	filterKinMatrix
Filter kinship pairs by the animals' sexes	filterPairs
Filter a genetic value report to selected animals	filterReport
Filter out kinship pairs below a threshold	filterThreshold
Genetic-value report list prior to ranking	finalRpt
Determine the generation number for each ID	findGeneration
Find loops in a pedigree tree	findLoops
Count total offspring for each animal	findOffspring
Determine the pedigree number for each ID	findPedigreeNumber
Standardize pedigree column names	fixColumnNames
Focal animal IDs from examplePedigree	focalAnimals
Simulate gene dropping through a pedigree	geneDrop
Join a character vector into an and/or list	get_and_or_list
Format the elapsed time since a start time	get_elapsed_time_str
Recursively collect an individual's ancestors	getAncestors
List each animal's high-kinship relatives	getAnimalsWithHighKinship
Get the auto-generated unknown-ID format	getAutoIdFormat
Get Box and Whisker Plot Description	getBoxWhiskerDescription
Build the changed-columns tab panel	getChangedColsTab
Get the configuration file name for the system	getConfigFileName
Calculate current age in years from a birth date	getCurrentAge
Prepend the date and time to a file name	getDatedFilename
Find date errors and convert dates in a pedigree	getDateErrorsAndConvertDatesInPed
Get demographic data	getDemographics
Reduce a pedigree to a group and its descendants	getDescendantPedigree
Create an empty errorLst object	getEmptyErrorLst
Build the error-list tab panel	getErrorTab
Get the direct relatives of selected animals from a pedigree file	getFileDirectRelatives
Get pedigree based on list of focal animals	getFocalAnimalPed
Get a focal-animal pedigree from a pedigree file	getFocalAnimalPedFromFile
Get the founder ids from a pedigree	getFounders
Assemble breeding-group genetic diversity heat-map statistics	getGeneticDiversityStats
Get genotypes from file	getGenotypes
Extract genotype data for a genetic value report	getGVGenotype
Get the population of interest for the Genetic Value analysis	getGVPopulation
Get ids of animals with only one parent	getIdsWithOneParent
Get the superset of columns that can be in a pedigree file	getIncludeColumns
Get the direct ancestors of selected animals	getLkDirectAncestors
Get the direct relatives of selected animals from the LabKey EHR	getLkDirectRelatives
Get offspring to corresponding animal IDs provided	getOffspring
Get parents to corresponding animal IDs provided	getParents
Get the direct relatives of selected animals from a pedigree	getPedDirectRelatives
Get pedigree from file	getPedigree
Get the maximum age of any animal in the pedigree	getPedMaxAge
Get possible column names for a studbook	getPossibleCols
Get potential parents for animals with unknown parents	getPotentialParents
List potential sires	getPotentialSires
Reduce a pedigree to probands and their ancestors	getProbandPedigree
Get the age distribution for the pedigree	getPyramidAgeDist
Create an age-sex pyramid plot of a pedigree	getPyramidPlot
Get required column names for a studbook	getRequiredCols
Get site information	getSiteInfo
Look up the maximum gestation period (days) for one or more species	getSpeciesGestation
Look up the minimum breeding age (years) for one or more species and sexes	getSpeciesMinBreedingAge
Get tokens from a character vector of lines	getTokenList
Get the version number of nprcgenekeepr	getVersion
Add animals to a breeding group or form new groups	groupAddAssign
Recommend gene-drop iterations for a pedigree	gvaConvergence
Check whether an animal has both parents	hasBothParents
Check for genotype data in dataframe	hasGenotype
Convert internal column names to display or header names	headerDisplayNames
Test whether a string is a valid date	is_valid_date_str
Identify the founders in a pedigree	isFounder
Reformat a kinship matrix into long form	kinMatrix2LongForm
Generate a kinship matrix	kinship
Build a kValue table from a list of kinship matrices	kinshipMatricesToKValues
Extract a kValue table from a kinship matrix	kinshipMatrixToKValues
Small hypothetical pedigree (Lacy 1989)	lacy1989Ped
Gene-drop alleles for lacy1989Ped (5000 iterations)	lacy1989PedAlleles
Load the site configuration for the modular Shiny application	loadSiteConfig
Load user-configurable species reproductive-parameter overrides	loadSpeciesOverrides
Log module events	logModuleEvent
Make a CEPH-style pedigree for each id	makeCEPH
Write copy of nprcgenekeepr::examplePedigree into a file	makeExamplePedigreeFile
Create Founder Statistics HTML Table	makeFounderStatsTable
Make a genetic diversity heat map	makeGeneticDiversityHeatmap
Create Genetic Summary Statistics HTML Table	makeGeneticSummaryTable
Make the initial groupMembers animal list	makeGroupMembers
Make the initial grpNum list	makeGroupNum
Deprecated alias for makeGroupNum	makeGrpNum
Convert a pedigree data frame into visNetwork-ready diagram data	makePedigreeDiagramData
Combine the Option 2 mating-unit forest into visNetwork-ready diagram data	makePedigreeMatingLayout
Make a relation classes table from kinship pairs	makeRelationClassesTable
Make a simulated pedigree from representative sires and dams	makeSimPed
Map IDs to Obfuscated IDs	mapIdsToObfuscated
Compute per-locus and population-wide expected heterozygosity	markerExpectedHeterozygosity
Compute a between-center allele-frequency differentiation statistic (Fst)	markerFst
Estimate pairwise kinship directly from marker genotypes (KING-robust)	markerKinship
Compute a descriptive, same-chromosome pairwise LD/block statistic	markerLdBlock
Compute per-animal observed heterozygosity from marker genotypes	markerObservedHeterozygosity
Flag Mendelian-inconsistent recorded parents from marker genotypes	markerParentageExclusion
Rank candidate replacement parents by a multilocus likelihood (LOD) score	markerParentageLikelihood
Estimate the variance of realized relatedness around pedigree kinship	markerRealizedRelatednessVariance
Calculate mean kinship for each animal in a kinship matrix	meanKinship
Breeding Groups Module - Server Function	modBreedingGroupsServer
Breeding Groups Module - UI Function	modBreedingGroupsUI
Cross-Center Identity Mapping Module - Server Function	modCrossCenterIdentityServer
Cross-Center Identity Mapping Module - UI Function	modCrossCenterIdentityUI
De-Identified Export Module - Server Function	modDeidentifiedExportServer
De-Identified Export Module - UI Function	modDeidentifiedExportUI
Genetic Diversity Module - Server Function	modGeneticDiversityServer
Genetic Diversity Module - UI Function	modGeneticDiversityUI
Genetic Value Analysis Module - Server Function	modGeneticValueServer
Genetic Value Analysis Module - UI Function	modGeneticValueUI
Genetic Value and Breeding Group Description Module - Server Function	modGvAndBgDescServer
Genetic Value and Breeding Group Description Module - UI Function	modGvAndBgDescUI
Data Input and Quality Control Module - Server Function	modInputServer
Data Input and Quality Control Module - UI Function	modInputUI
Marker Genetics Module - Server Function	modMarkerGeneticsServer
Marker Genetics Module - UI Function	modMarkerGeneticsUI
Mate Pair Analysis Module - Server Function	modMatePairServer
Mate Pair Analysis Module - UI Function	modMatePairUI
ORIP Reporting Module - Server Function	modORIPReportingServer
ORIP Reporting Module - UI Function	modORIPReportingUI
Pedigree Browser Module - Server Function	modPedigreeServer
Pedigree Browser Module - UI Function	modPedigreeUI
Potential Parents Module - Server Function	modPotentialParentsServer
Potential Parents Module - UI Function	modPotentialParentsUI
Age-Sex Pyramid Module - Server Function	modPyramidServer
Age-Sex Pyramid Module - UI Function	modPyramidUI
Summary Statistics Module - Server Function	modSummaryStatsServer
Summary Statistics Module - UI Function	modSummaryStatsUI
Obfuscate dates with a random day offset	obfuscateDate
De-identify a computeGenomicROH() result table	obfuscateGenomicROH
De-identify a sequence-scale genotype matrix	obfuscateGenotypeMatrix
Create ID aliases of a specified length	obfuscateId
De-identify a markerLdBlock() result table	obfuscateLdBlocks
Obfuscate a pedigree by aliasing IDs and shifting dates	obfuscatePed
De-identify a twin/zygosity relations table	obfuscateTwinRelations
Tabulate offspring counts, optionally by population	offspringCounts
Gene-drop alleles example (baboon pedigree)	ped1Alleles
Example studbook with a duplicated record	pedDuplicateIds
Example studbook with sex-mismatched parents	pedFemaleSireMaleDam
Valid example studbook (no QC errors)	pedGood
Example studbook with invalid birth dates	pedInvalidDates
Example studbook missing the birth date column	pedMissingBirth
Raw pedigree-file fragment for testing (5 columns)	pedOne
Example studbook with a male as both sire and dam	pedSameMaleIsSireAndDam
Raw pedigree-file fragment for testing (7 columns)	pedSix
Pedigree with simulated genotypes (from qcPed)	pedWithGenotype
Genetic-value report for pedWithGenotype	pedWithGenotypeReport
Print an nprcgenekeepr summary object	print.summary.nprcgenekeeprErr print.summary.nprcgenekeeprGV
Process qcStudbook Result into UI-Friendly Format	processQcStudbookResult
Potential breeder IDs (29 baboons)	qcBreeders
Example quality-controlled baboon pedigree	qcPed
Genetic-value report for qcPed	qcPedGvReport
Run quality control on a studbook or pedigree	qcStudbook
Rank animals by genetic value	rankSubjects
Read a kinship overrides table from a file	readKinshipOverrides
Read a twin/zygosity relations table from a file	readTwinRelations
Remove automatically generated IDs from pedigree	removeAutoGenIds
Remove duplicate records from pedigree	removeDuplicates
Remove dates before a specified year	removeEarlyDates
Remove potential sires from a list of IDs	removePotentialSires
Remove uninformative founders	removeUninformativeFounders
Remove placeholder animals added for unknown parents	removeUnknownAnimals
Generate a genetic value report for a pedigree	reportGV
Report eligible individual mate pairs with kinship and genetic-value context	reportMatePairs
Merge two centers' pedigrees via a curator-confirmed identity link	resolveCrossCenterIds
Rhesus genotypes (two haplotypes per animal)	rhesusGenotypes
Obfuscated rhesus pedigree object	rhesusPedigree
Run the GeneKeepR Shiny Application	runGeneKeepR
Run the Modular Version of GeneKeepR (Deprecated)	runModularApp
Run Quality Control on Studbook with UI-Friendly Results	runQcStudbook
Execute an expression with error handling	safeExecute
Write copy of dataframes to either CSV, TXT, or Excel file	saveDataframesAsFiles
Save Plot to File	savePlotToFile
Set a reproducible RNG seed across R versions	set_seed
Set the auto-generated unknown-ID format	setAutoIdFormat
Set the exit date when no exit column exists	setExit
Configure Rlabkey authentication for the current session	setLabKeyDefaults
Flag animals as the population of interest	setPopulation
Determine if Changed Columns tab should be displayed	shouldShowChangedColsTab
Determine if the ORIP Reporting tab should be displayed	shouldShowOripTab
Shrink a pedigree to fit within a bit-size budget	shrinkPedigree
Hypothetical 17-animal pedigree	smallPed
Pedigree tree built from smallPed	smallPedTree
Per-species reproductive parameters	speciesGestation
Summarize imputed kinship values	summarizeKinshipValues
Summarize a studbook quality-control error list	summary.nprcgenekeeprErr summary.nprcgenekeeprGV
Force dataframe columns to character	toCharacter
Trim a pedigree to a group's ancestors	trimPedigree
Get integer within a range	withinIntegerRange

Package: nprcgenekeepr 2.0.0.9000

nprcgenekeepr: Genetic Tools for Colony Management

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