OmicsLake - OmicsLake: Versioned, On-Disk Omics Data Management for Bioconductor
A lightweight framework for versioned, on-disk omics data management using DuckDB, Arrow, and Parquet. It provides read/write-style functions, snapshots, and version-aware dataset lineage for tracked or explicitly annotated workflows. Adapters preserve supported Bioconductor containers, including SummarizedExperiment and MultiAssayExperiment, while retaining queryable tabular components.
Last updated
infrastructuredataimportdatarepresentation
4.82 score 41 scriptsOmicsLake - OmicsLake: Versioned, On-Disk Omics Data Management for Bioconductor
A lightweight framework for versioned, on-disk omics data management using DuckDB, Arrow, and Parquet. It provides read/write-style functions, snapshots, and version-aware dataset lineage for tracked or explicitly annotated workflows. Adapters preserve supported Bioconductor containers, including SummarizedExperiment and MultiAssayExperiment, while retaining queryable tabular components.
Last updated
infrastructuredataimportdatarepresentation
4.69 score 41 scripts
glycoTraitR - Compute and analyze the glycan structrual traits from GPSM data
GlycoTraitR is an R package for analyzing glycoproteomics data, particularly glycopeptide-spectrum matches (GPSMs). It supports results generated by the pGlyco3 and Glyco-Decipher search engines. The package parses glycan structures, computes monosaccharide compositions and structural traits, and performs differential analysis of glycan heterogeneity. It constructs trait-by-PSM matrices stored in a SummarizedExperiment object, supports user-defined structural motifs, and provides visualization utilities for interpreting glycan trait changes.
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proteomicsmassspectrometryvisualizationsoftware
4.40 score 2 scripts 199 downloadssynergyMixR - Mixture-Based Muscle Synergy Analysis
Provides tools for analyzing muscle synergy using various statistical methods including MPCA and MFA. Enables researchers to identify distinct subgroups within populations that exhibit different muscle synergy patterns, rather than forcing all subjects into a single global model.
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openblascppopenmp
3.54 score