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doppelgangR - Identify likely duplicate samples from genomic or meta-data
The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).
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immunooncologyrnaseqmicroarraygeneexpressionqualitycontrolbioconductor-packageu24ca289073
7.42 score 5 stars 50 scripts 505 downloadsffpe - Quality assessment and control for FFPE microarray expression data
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
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microarraygeneexpressionqualitycontrol
4.13 score 34 scripts 530 downloads