plot_stadia(): argument combinations | Comparing several patients with overlay | Testicular volume: a raw ml reading, not a bead index | The SDS methodology: mid-P values, not LMS | Reference
Package: tanner 1.8.0
Stef van Buuren
tanner: Puberty Stage Line Diagrams and SDS for Tanner Pubertal Stages
Plots Tanner pubertal stage measurements (genital, pubic hair, testicular volume, breast, menarche) against Dutch 1997 growth-study references as stage line diagrams, and converts observed stages to age-conditional standard deviation scores (SDS). Testicular volume can be entered as a raw orchidometer reading in ml. Implements the method of van Buuren and Ooms (2009) <doi:10.1002/sim.3567>.
Authors:
tanner_1.8.0.tar.gz
tanner_1.8.0.zip(r-4.7-any)tanner_1.8.0.zip(r-4.6-any)tanner_1.8.0.zip(r-4.5-any)
tanner_1.8.0.tgz(r-4.6-any)tanner_1.8.0.tgz(r-4.5-any)
tanner_1.8.0.tar.gz(r-4.7-any)tanner_1.8.0.tar.gz(r-4.6-any)
tanner_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tanner/json (API)
| # Install 'tanner' in R: |
| install.packages('tanner', repos = c('https://growthcharts.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/growthcharts/tanner/issues
Pkgdown/docs site:https://growthcharts.org
Datasets:
- nl1997 - Dutch 1997 pubertal stage references
- nl1997_lines - Dutch 1997 pubertal stage reference lines
Last updated from:88a5f181f1. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 158 | ||
| source / vignettes | OK | 177 | ||
| linux-release | OK | 130 | ||
| macos-release | OK | 133 | ||
| macos-oldrel | OK | 162 | ||
| windows-devel | OK | 75 | ||
| windows-release | OK | 81 | ||
| windows-oldrel | OK | 80 | ||
| wasm-release | OK | 127 |
Exports:calculate_sdsfind_stage_segmentsinterpolate_trajectoryplot_stadiaplot_stadia_dataplot_stadia_generalplot_stadia_linesplotdumpdirplotterplotterprotnologoupload_tryCatch_pro
Dependencies:bitbit64clicliprcpp11crayonforcatsgluehavenhmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangtibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate the standard deviation score (SDS) of a pubertal stage | calculate_sds |
| Find segments of constant stage in a vector | find_stage_segments |
| Interpolate a pubertal stage trajectory along reference curves | interpolate_trajectory |
| Dutch 1997 pubertal stage references | nl1997 |
| Dutch 1997 pubertal stage reference lines | nl1997_lines |
| Plot a puberty stadia diagram | plot_stadia |
| Draw a person's pubertal stage trajectory on a puberty stadia plot | plot_stadia_data |
| Draw the frame, percentile bands and axes of a puberty stadia plot | plot_stadia_general |
| Draw reference percentile lines on a puberty stadia plot | plot_stadia_lines |
| Directory where generated plot and data files are written | plotdumpdir |
| rApache handler for the puberty plot webapp | plotter |
| rApache handler for the professional puberty plot webapp | plotterpro |
| Draw the TNO logo | tnologo |
| rApache handler for uploading puberty data files | upload_tryCatch_pro |
