Your Universal Glycan Text Translator 🔄 | The Babel Tower of Glycan Text Formats 🗼 | Your Parsing Toolkit 🛠️ | Part 0: auto_parse() | Part 1: IUPAC Family — The Popular Kids 🌟 | IUPAC-Condensed: The Literature Standard | IUPAC-Short: Literature's Favorite | IUPAC-Extended: The Formal One | Part 2: Database Formats — The Heavy Hitters 💪 | GlycoCT: The Precision Format | WURCS: The Complex Structure Format | Linear Code: The Simplified Format | Part 3: Software-Specific Formats — The Specialists 🔬 | pGlyco Format: Proteomics Tool | StrucGP Format: Alphabetical System | The Bottom Line 🎯
Package: glyparse 0.7.1
Bin Fu
glyparse: Parsing Glycan Structure Text Representations
Provides functions to parse glycan structure text representations into 'glyrepr' glycan structures. Currently, it supports StrucGP-style, pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact, WURCS, LINUCS, Linear Code, GlycoCT, and KCF format. It also provides an automatic parser to detect the format and parse the structure string.
Authors:
glyparse_0.7.1.tar.gz
glyparse_0.7.1.zip(r-4.7-any)glyparse_0.7.1.zip(r-4.6-any)glyparse_0.7.1.zip(r-4.5-any)
glyparse_0.7.1.tgz(r-4.6-any)glyparse_0.7.1.tgz(r-4.5-any)
glyparse_0.7.1.tar.gz(r-4.7-any)glyparse_0.7.1.tar.gz(r-4.6-any)
glyparse_0.7.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
glyparse/json (API)
| # Install 'glyparse' in R: |
| install.packages('glyparse', repos = c('https://glycoverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/glycoverse/glyparse/issues
Pkgdown/docs site:https://glycoverse.github.io
Last updated from:788aa49f81 (on v0.7.1). Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 148 | ||
| source / vignettes | OK | 240 | ||
| linux-release | OK | 160 | ||
| macos-release | OK | 87 | ||
| macos-oldrel | OK | 89 | ||
| windows-devel | OK | 102 | ||
| windows-release | OK | 112 | ||
| windows-oldrel | OK | 96 | ||
| wasm-release | OK | 120 |
Exports:auto_parseparse_glycam_iupacparse_glycoctparse_iupac_compactparse_iupac_condensedparse_iupac_extendedparse_iupac_shortparse_kcfparse_linear_codeparse_linucsparse_pglyco_strucparse_strucgp_strucparse_wurcs
Dependencies:backportscheckmateclicpp11dplyrgenericsglueglyreprigraphlatticelifecyclemagrittrMatrixpillarpkgconfigpurrrR6rlangrstackdequestringistringrtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Automatic Structure Parsing | auto_parse |
| Parse GlyCAM IUPAC Structures | parse_glycam_iupac |
| Parse GlycoCT Structures | parse_glycoct |
| Parse IUPAC-compact Structures | parse_iupac_compact |
| Parse IUPAC-condensed Structures | parse_iupac_condensed |
| Parse IUPAC-extended Structures | parse_iupac_extended |
| Parse IUPAC-short Structures | parse_iupac_short |
| Parse KCF Structures | parse_kcf |
| Parse Linear Code Structures | parse_linear_code |
| Parse LINUCS Structures | parse_linucs |
| Parse pGlyco Structures | parse_pglyco_struc |
| Parse StrucGP Structures | parse_strucgp_struc |
| Parse WURCS Structures | parse_wurcs |