Package: gdscloud 0.99.3

Xiuwen Zheng

gdscloud: Cloud Storage Access for GDS Files

Provides read-only access to GDS (Genomic Data Structure) files stored on cloud storage services including Amazon S3, Google Cloud Storage (GCS), and Azure Blob Storage, as well as any HTTP/HTTPS URL. Extends the 'gdsfmt' package to transparently open GDS files from cloud URLs (http://, https://, s3://, gs://, az://) using efficient block caching and HTTP Range requests via libcurl.

Authors:Xiuwen Zheng [aut, cre]

gdscloud_0.99.3.tar.gz
gdscloud_0.99.3.zip(r-4.7-x86_64)gdscloud_0.99.3.zip(r-4.7-arm64)gdscloud_0.99.3.zip(r-4.6-x86_64)gdscloud_0.99.3.zip(r-4.6-arm64)gdscloud_0.99.3.zip(r-4.5-x86_64)
gdscloud_0.99.3.tgz(r-4.6-x86_64)gdscloud_0.99.3.tgz(r-4.6-arm64)gdscloud_0.99.3.tgz(r-4.5-x86_64)gdscloud_0.99.3.tgz(r-4.5-arm64)
gdscloud_0.99.3.tar.gz(r-4.7-arm64)gdscloud_0.99.3.tar.gz(r-4.7-x86_64)gdscloud_0.99.3.tar.gz(r-4.6-arm64)gdscloud_0.99.3.tar.gz(r-4.6-x86_64)
gdscloud_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gdscloud/json (API)

# Install 'gdscloud' in R:

install.packages('gdscloud', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zhengxwen/gdscloud/issues

Uses libs:

curl– Easy-to-use client-side URL transfer library
openssl– Secure Sockets Layer toolkit
c++– GNU Standard C++ Library v3

On CRAN:

infrastructure dataimport curl openssl cpp

3.48 score 11 exports 1 dependencies

Last updated from:55f0ed70d1. Checks:1 WARNING, 15 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	161
linux-devel-arm64	OK	124
linux-devel-x86_64	OK	137
source / vignettes	OK	221
linux-release-arm64	OK	179
linux-release-x86_64	OK	150
macos-release-arm64	OK	104
macos-release-x86_64	OK	188
macos-oldrel-arm64	OK	116
macos-oldrel-x86_64	OK	228
windows-devel-arm64	OK	192
windows-devel-x86_64	OK	136
windows-release-arm64	OK	230
windows-release-x86_64	OK	144
windows-oldrel-x86_64	OK	145
wasm-release	OK	145

Exports:gdsCloudCacheClear gdsCloudCacheInfo gdsCloudCacheSize gdsCloudConfigAzure gdsCloudConfigGCS gdsCloudConfigHTTP gdsCloudConfigS3 gdsCloudExportCredentials gdsCloudList gdsCloudOpen gdsCloudSchemes

Dependencies:gdsfmt

Cloud Storage Access for GDS Files

Rendered fromgdscloud.Rmdusingknitr::rmarkdown

Last update: 2026-07-08
Started: 2026-04-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Cloud Storage Access for GDS Files	gdscloud-package gdscloud
Cache Control for Cloud GDS Access	gdsCloudCacheClear gdsCloudCacheInfo gdsCloudCacheSize
Configure HTTP/HTTPS Credentials	gdsCloudConfigHTTP
Configure Cloud Storage Credentials	gdsCloudConfigAzure gdsCloudConfigGCS gdsCloudConfigS3
Export Cloud Credentials to Child Processes	gdsCloudExportCredentials
List Open Cloud Streams	gdsCloudList
Open a GDS File from Cloud Storage	gdsCloudOpen
List Supported Cloud URL Schemes	gdsCloudSchemes