Package: SpaMTPData 0.99.0

Tianyao Lu

SpaMTPData: Experiment Data Resources for SpaMTP Workflows

Provides lightweight, version-aware access to spatial metabolomics and multi-omics experiment data used in SpaMTP workflows. Resources cover mouse brain, mouse urinary bladder, simulated single-cell multi-omics, annotation-refinement, and human brain examples. Large files are retrieved and cached through ExperimentHub rather than stored in the package repository.

Authors:Tianyao Lu [aut, cre], Andrew Causer [aut], Quan Nguyen [aut]

SpaMTPData_0.99.0.tar.gz
SpaMTPData_0.99.0.zip(r-4.7-any)SpaMTPData_0.99.0.zip(r-4.6-any)SpaMTPData_0.99.0.zip(r-4.5-any)
SpaMTPData_0.99.0.tgz(r-4.6-any)SpaMTPData_0.99.0.tgz(r-4.5-any)
SpaMTPData_0.99.0.tar.gz(r-4.7-any)SpaMTPData_0.99.0.tar.gz(r-4.6-any)
SpaMTPData_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpaMTPData/json (API)

# Install 'SpaMTPData' in R:

install.packages('SpaMTPData', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bcrl-tylu/spamtpdata/issues

On CRAN:

experimentdata experimenthub homo_sapiens_data mus_musculus_data reproducibleresearch

2.70 score 4 exports 57 dependencies

Last updated from:0e70060668. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	189
linux-devel	OK	168
source / vignettes	OK	201
linux-release	OK	187
macos-release	OK	130
macos-oldrel	OK	133
windows-devel	OK	92
windows-release	OK	91
windows-oldrel	OK	133
wasm-release	OK	170

Exports:SpaMTPData SpaMTPDataResource SpaMTPDataResources SpaMTPDataVersion

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Accessing SpaMTP Experiment Data

Introduction | Loading a dataset | Session information

Rendered fromSpaMTPData.Rmdusingknitr::rmarkdown

Last update: 2026-08-14
Started: 2026-08-14

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Retrieve a SpaMTP experiment resource	SpaMTPData
Alias for explicit SpaMTPData resource retrieval	SpaMTPDataResource
List SpaMTP experiment resources	SpaMTPDataResources
Report the available SpaMTPData releases	SpaMTPDataVersion