Package: ClinicalVariantR 0.99.3
ClinicalVariantR: Clinical Variant Interpretation Using ACMG/AMP Germline Criteria
ClinicalVariantR is an interactive Shiny platform for evidence-based germline variant classification under ACMG/AMP 2015 guidelines. It accepts VEP-, SnpEff-, or ANNOVAR-annotated VCF files and applies automated plus curator-guided ACMG criteria. The package supports streaming analysis of large call sets and exports structured per-criterion evidence with reproducibility metadata for clinical review.
Authors:
ClinicalVariantR_0.99.3.tar.gz
ClinicalVariantR_0.99.3.zip(r-4.7-any)ClinicalVariantR_0.99.3.zip(r-4.6-any)ClinicalVariantR_0.99.3.zip(r-4.5-any)
ClinicalVariantR_0.99.3.tgz(r-4.6-any)ClinicalVariantR_0.99.3.tgz(r-4.5-any)
ClinicalVariantR_0.99.3.tar.gz(r-4.7-any)ClinicalVariantR_0.99.3.tar.gz(r-4.6-any)
ClinicalVariantR_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ClinicalVariantR/json (API)
| # Install 'ClinicalVariantR' in R: |
| install.packages('ClinicalVariantR', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/safarafique/clinicalvariantr/issues
softwarevariantannotationgeneticssequencingvisualizationguiclassification
Last updated from:72cd727e3f. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 229 | ||
| linux-devel | OK | 416 | ||
| source / vignettes | OK | 354 | ||
| linux-release | OK | 403 | ||
| macos-release | OK | 332 | ||
| macos-oldrel | OK | 260 | ||
| windows-devel | OK | 347 | ||
| windows-release | OK | 340 | ||
| windows-oldrel | OK | 338 | ||
| wasm-release | OK | 183 |
Exports:ClinicalVariantRClinicalVariantRApp
Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomebslibcachemcigarilloclicliprcodetoolscommonmarkcpp11crayoncrosstalkcurldata.tableDBIDelayedArraydigestDTevaluatefastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehighrhmshtmltoolshtmlwidgetshttpuvhttrIRangesjquerylibjsonliteKEGGRESTknitrlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslotelpillarpkgconfigpngprettyunitsprogresspromisesR6rappdirsRcppRCurlreadrrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassSeqinfoshinysnowsourcetoolsSparseArraySummarizedExperimentsystibbletidyselecttinytextzdbutf8VariantAnnotationvctrsvroomwithrxfunXMLxtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build the ClinicalVariantR Shiny application | ClinicalVariantR |
| Alias for 'ClinicalVariantR' | ClinicalVariantRApp |
