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Fundamental Algorithms in Bioinformatics

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Lecture 7: From alignment graphs to formal dynamic programming

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Lecture 14: BLAST I

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Lecture 13: Probability of a complete query match in a database

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Lecture 12: Expected longest common substring II

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Lecture 8: Sequence alignment using dynamic programming - continued

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Lecture 9: Local sequence alignment

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Lecture 6: Computing similarity using an alignment graph

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Lecture 11b: Expected Length of the Longest Common Substring

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Lecture 10: End-gap-free alignment and whole-genome shotgun sequencing

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Lecture 4: Extending the model of sequence similarity

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