Learning Amino Acids Part 1: Non-Polar Amino Acids, Rodrigues Rotation, and Lennard-Jones Potential

🧬 Back to basics! Learning non-polar amino acids, what zwitterions actually are, and dipping into the applied math — Rodrigues rotation and Lennard-Jones potential. Slowly building toward optimal phi/psi! Motivations We’ve explored quite a bit lately in molecular dynamic simulation and then protein-protein docking as well the last time. There is still so much to learn. I’ve decided to go back to…