# bel (blogs) — RSS Amplifier Recent posts from the 2 feeds in the RSS Amplifier directory that cover bel. Page: Feed: --- ## [PUC’s Decision and Order – COPA Tariff – August 2026](https://puc.bz/pucs-decision-and-order-copa-tariff-august-2026/) _2026-08-07 · Ryan Rudon · Belize Public Utilities Commission_ Decision and Order – COPA Tariff for BEL – August 2026 Download ## [BEL Submission of COPA Tariff Filling – August 2026](https://puc.bz/bel-submission-of-copa-tariff-filling-august-2026/) _2026-08-07 · Ryan Rudon · Belize Public Utilities Commission_ BEL Application to PUC for COPA Tariff Review – August 2026 Download ## [Mapping from SSSOM to OWL](https://cthoyt.com/2026/08/07/sssom-to-owl.html) _2026-08-07 · Charles Tapley Hoyt · Biopragmatics_ The Simple Standard for Sharing Ontological Mappings (SSSOM) specifies a transformation from its data model to the to Web Ontology Language (OWL) its documentation. This post is about implementing and extending that transformation in the sssom-pydantic Python package and the implications for ontology curation and maintenance, especially within the context of NFDI4Chem. ## [Standards Don’t Succeed Without Community Work](https://cthoyt.com/2026/08/07/standards-need-community-work.html) _2026-08-07 · Charles Tapley Hoyt · Biopragmatics_ In March 2026, the NIH Common Fund Data Ecosystem issued a request for comments for a proposal for a knowledge graph exchange format entitled JSON Knowledge Graph Exchange Format (JKG). This post is about the burden of proposing yet another standard and highlights sage wisdom from Nico Matentzoglu about the importance of community work in pushing standards. ## [PUC Reaffirms its Commitment to Due Process in Regulating Public Utilities in Belize](https://puc.bz/puc-reaffirms-its-commitment-to-due-process-in-regulating-public-utilities-in-belize/) _2026-08-05 · Ryan Rudon · Belize Public Utilities Commission_ Press Release – PUC Reaffirms its Commitment to Due Process in Regulating Public Utilities in Belize Download ## [LLM Notes and Policies](https://cthoyt.com/2026/07/18/llm-notes.html) _2026-07-18 · Charles Tapley Hoyt · Biopragmatics_ Generative artificial intelligence, large language models (LLMs), and agentic artificial intelligence have become unavoidable topics of conversation for programmers and scientists alike. This post comprises links to external writing about these topics from which I would like to draw inspiration when crafting my own communication and policies. ## [PUBLIC NOTICE: PUC Issues Final Decision on BEL’s 2026|2027 Annual Review Proceeding](https://puc.bz/public-notice-puc-issues-final-decision-on-bels-20262027-annual-review-proceeding/) _2026-07-17 · Ryan Rudon · Belize Public Utilities Commission_ Public Notice – PUC Issues Final Decision on BEL’s 2026\_2027 Annual Review Proceeding Download ## [Final Decision and Order – BEL 2026|2027 Annual Review Proceedings](https://puc.bz/final-decision-and-order-bel-20262027-annual-review-proceedings/) _2026-07-17 · Ryan Rudon · Belize Public Utilities Commission_ Final Decision and Order – BEL 2026\_2027 Annual Review Proceedings Download ## [BEL COMMENTS ON INITIAL DECISION 2026 ANNUAL REVIEW PROCEEDING THE ANNUAL TARIFF PERIOD 2026|2027](https://puc.bz/bel-comments-on-initial-decision-2026-annual-review-proceeding-the-annual-tariff-period-20262027/) _2026-07-16 · Ryan Rudon · Belize Public Utilities Commission_ 2026-07-13-BEL Response on 2026 ARP Initial Decision-Approved Download ## [Terms and Conditions of Licence to All Persons 2026](https://puc.bz/terms-and-conditions-of-licence-to-all-persons-2026/) _2026-07-03 · Ryan Rudon · Belize Public Utilities Commission_ Terms and Conditions of Licence to All Persons 2026 Download ## [Ask the crowd: AI or not (Sponsored)](https://crawlproof.com/a/yF1Wu3f7WDHT) _2026-07-03 · **Sponsored**_ Get a transparent verdict from verified humans via web, RSS, or API. ## [Public Notice – Initial Decision on BEL’s 2026|2027 Annual Review Proceeding & COPA Tariff Request](https://puc.bz/public-notice-initial-decision-on-bels-20262027-annual-review-proceeding-copa-tariff-request/) _2026-07-02 · Ryan Rudon · Belize Public Utilities Commission_ Public Notice – Initial Decision on BEL’s 2026 -2027 Annual Review Proceeding & COPA Tariff Request (FINAL) Download ## [Initial Decision – BEL’s 2026|2027 Annual Review Proceeding](https://puc.bz/initial-decision-bels-20262027-annual-review-proceeding/) _2026-07-02 · Ryan Rudon · Belize Public Utilities Commission_ Initial Decision – BEL’s 2026|2027 Annual Review Proceeding Download ## [Comparing manually curated semantic mappings in SSSOM](https://cthoyt.com/2026/06/19/comparing-sssom.html) _2026-06-19 · Charles Tapley Hoyt · Biopragmatics_ I am currently supporting Philip Strömert and Noura Rayya in the efforts to modernize and revitalize the Chemical Methods Ontology (CHMO) to support annotation of instrumentation used to produce experimental data captured in the Chemotion electronic laboratory notebook as part of NFDIChem. This post is about the adoption of Simple Standard for Sharing Ontological Mappings (SSSOM) to support… ## [How to Track and Better Understand Your Energy Usage](https://puc.bz/how-to-track-and-better-understand-your-energy-usage/) _2026-06-09 · Ryan Rudon · Belize Public Utilities Commission_ PUC Elec Usage v2 Web 1 Download PUC Elec Usage v2 Web 2 Download PUC Customer Complaint and Dispute Process ## [A practical approach to translate OWL to SKOS](https://cthoyt.com/2026/06/03/owl-to-skos.html) _2026-06-03 · Charles Tapley Hoyt · Biopragmatics_ The data model in PyOBO closely resembles the Web Ontology Language (OWL) and macros in the OBO Flat File format. However, some communities prefer the simplified nature of the SKOS data model compared to the highly precise (and sometimes burdensome) nature of OWL semantics. This post describes the workflow I implemented to downscale OWL to SKOS. ## [Transparent provenance for derived semantic mappings in SSSOM](https://cthoyt.com/2026/05/29/sssom-derived-from.html) _2026-05-29 · Charles Tapley Hoyt · Biopragmatics_ The Simple Standard for Sharing Ontological Mappings (SSSOM) requires semantic mappings to annotate a justification from the Semantic Mapping Vocabulary (SEMAPV) such as semapv:ManualMappingCuration, semapv:MappingInversion, and semapv:MappingChaining. However, SSSOM did not have a mechanism for tracking which mappings were used during inference workflows like inversion or chaining. This post is… ## [Discussions at the 7th NFDI4Chem Consortium Meeting](https://cthoyt.com/2026/05/18/nfdi4chem-7th-consortium-meeting.html) _2026-05-18 · Charles Tapley Hoyt · Biopragmatics_ The 7th NFDI4Chem consortium meeting took place last week in Jena. This post is a summary of some of the interesting discussions I had there. ## [International Society of Biocuration Presents: Curate This!](https://cthoyt.com/2026/03/03/curate-this.html) _2026-03-03 · Charles Tapley Hoyt · Biopragmatics_ While researchers typically communicate their work through poster presentations, oral presentations, and written communication, programmers often give (live) demonstrations. I’m not aware of any technical nor practical barriers for why curators couldn’t do the same, and always wished that curators did this more often. This post is about how I planned to make this a reality by starting a podcast… ## [Efficient Bulk Access to Citations in OpenCitations](https://cthoyt.com/2026/02/10/opencitations-client.html) _2026-02-10 · Charles Tapley Hoyt · Biopragmatics_ OpenCitations aggregates and deduplicates bibliographic information from CrossRef, Europe PubMed Central, and other sources to construct a comprehensive, open index of citations between scientific works. This post describes the opencitations-client package which wraps the OpenCitations API and implements an automated pipeline for locally downloading, caching, and accessing OpenCitations in bulk. ## [Challenges with Semantic Mappings](https://cthoyt.com/2026/01/20/semantic-mapping-challenges.html) _2026-01-20 · Charles Tapley Hoyt · Biopragmatics_ There are many challenges associated with the curation, publication, acquisition, and usage of semantic mappings. This post examines their philosophical, technical, and practical implications, highlights existing solutions, and describes opportunities for next steps for the community of curators, semantic engineers, software developers, and data scientists who make and use semantic mappings. ## [World's cheapest GPUs, deployed fast (Sponsored)](https://crawlproof.com/a/JjNFFfgMpNF2) _2026-01-20 · **Sponsored**_ Deploy a live GPU-backed API in minutes for under $10 ## [Semantic Mappings Enable Automated Assembly](https://cthoyt.com/2026/01/16/mappings-for-automated-assembly.html) _2026-01-16 · Charles Tapley Hoyt · Biopragmatics_ Data and knowledge originating from heterogeneous sources often use heterogeneous controlled vocabularies and/or ontologies for annotating named entities. Semantic mappings are essential towards resolving these discrepancies and integrating in a coherent way. This post highlights how this looks in two scenarios: when constructing a knowledge graph for graph machine learning and when constructing a… ## [Mapping from SSSOM to JSKOS](https://cthoyt.com/2026/01/15/sssom-to-jskos.html) _2026-01-15 · Charles Tapley Hoyt · Biopragmatics_ JSKOS (JSON for Knowledge Organization Systems) is a JSON-based data model for representing terminologies, thesauri, classifications, and other semantic artifacts. Like the Simple Standard for Sharing Ontological Mappings (SSSOM), it can also encode semantic mappings. This post is about developing and implementing a crosswalk between them in the sssom-pydantic Python package. ## [Mapping from SSSOM to Wikidata](https://cthoyt.com/2026/01/08/sssom-to-wikidata.html) _2026-01-08 · Charles Tapley Hoyt · Biopragmatics_ At the 4th Ontologies4Chem Workshop in Limburg an der Lahn, I proposed an initial crosswalk between the Simple Standard for Sharing Ontological Mappings (SSSOM) and the Wikidata semantic mapping data model. This post describes the motivation for this proposal and the concrete implementation I’ve developed in sssom-pydantic. ## [Validating Prefix Maps in LinkML Schemas](https://cthoyt.com/2026/01/06/bioregistry-linkml-validation.html) _2026-01-06 · Charles Tapley Hoyt · Biopragmatics_ LinkML enables defining data models and data schemas in YAML informed by semantic web best practices. As such, each definition includes a prefix map. Similarly to my previous posts on validating the prefix maps appearing in Turtle files and in unfamiliar SPARQL endpoints, this post showcases describes a new extension to the Bioregistry that validates prefix maps in LinkML definitions. ## [Books I Read in 2025](https://cthoyt.com/2026/01/01/books-in-2025.html) _2026-01-01 · Charles Tapley Hoyt · Biopragmatics_ Here are the books I read in 2025. My goals for the year were to get some more variety, and I think I managed that. ## [Annotating the Literature with Named Entity Recognition](https://cthoyt.com/2025/12/19/annotating-the-literature-demo.html) _2025-12-19 · Charles Tapley Hoyt · Biopragmatics_ Annotating the literature with mentions of key concepts from a given domain is often the first step towards extracting more substantial structured knowledge. This can be challenging, as it typically encompasses acquiring and processing the relevant literature and ontologies then installing and applying difficult-to-use named entity recognition (NER) workflows. This post highlights software… ## [Machine-Actionable Training Materials at BioHackathon Germany 2025](https://cthoyt.com/2025/12/09/biohackathon-de-2025.html) _2025-12-09 · Charles Tapley Hoyt · Biopragmatics_ I recently attended the 4th BioHackathon Germany hosted by the German Network for Bioinformatics Infrastructure (de.NBI). I participated in the project On the Path to Machine-actionable Training Materials in order to improve the interoperability between DALIA, TeSS, mTeSS-X, and Schema.org. This post gives a summary of the activities leading up to the hackathon and the results of our happy… ## [Extracting Semantic Mappings from BioPortal in SSSOM](https://cthoyt.com/2025/11/23/sssom-from-bioportal.html) _2025-11-23 · Charles Tapley Hoyt · Biopragmatics_ Earlier this week, a question was asked on OBO Foundry Slack on where to find semantic mappings to terms in the Systematized Nomenclature of Medicine - Clinical Terms (SNOMED-CT). While some are available in the SeMRA Disease Mappings Database, there are many more available within BioPortal, which has access to the entire SNOMED-CT source data and has produced semantic mapping predictions using… ## [Databases as Ontologies Part 1 - Background and Software](https://cthoyt.com/2025/10/14/databases-as-ontologies-1-background.html) _2025-10-14 · Charles Tapley Hoyt · Biopragmatics_ This is the first of a two-part post about encoding databases as ontologies. In this post, I give a background on the problems in biocuration that led me to start encoding databases as ontologies, the software I have written to do it, and the repository I have created to store the resulting artifacts in a FAIR, open, and sustainable way. See also the second part which describes how I applied these… ## [Databases as Ontologies Part 2 - A Case Study with HGNC](https://cthoyt.com/2025/10/14/databases-as-ontologies-2-hgnc.html) _2025-10-14 · Charles Tapley Hoyt · Biopragmatics_ This is the second of a two-part post about encoding databases as ontologies. In the first part, I gave a background on how I started working on this problem and the software stack I developed along the way. In this post, I explain the philosophy and design about how I encoded the HGNC (HUGO Gene Nomenclature Committee) database as an ontology using PyOBO. ## [Brisk AI News Briefings (Sponsored)](https://crawlproof.com/a/AdB0WoFRifyr) _2025-10-14 · **Sponsored**_ Read AI summaries and listen to audio briefings for top stories. ## [Bridging NFDI’s culture and chemistry knowledge graphs](https://cthoyt.com/2025/10/07/bridging-culture-and-chemistry.html) _2025-10-07 · Charles Tapley Hoyt · Biopragmatics_ At the sixth NFDI4Chem consortium meeting, Torsten Schrade from the NFDI4Culture consortium gave a lovely and whimsical talk entitled A Data Alchemist’s Journey through NFDI which explored ways that we might federate and jointly query both consortia’s knowledge via their respective SPARQL endpoints. He proposed a toy example in which he linked paintings depicting alchemists trying to make gold to… ## [Representing Negative Knowledge](https://cthoyt.com/2025/10/07/negative-rdf.html) _2025-10-07 · Charles Tapley Hoyt · Biopragmatics_ Representing negative knowledge in the semantic web is an open problem. This post is going to be a living document where I keep notes on use cases, potential solutions, and awful hacks. ## [Suggesting new relations in ROR from Wikidata](https://cthoyt.com/2025/09/25/enriching-ror-with-wikidata.html) _2025-09-25 · Charles Tapley Hoyt · Biopragmatics_ I was looking at the different NFDI consortia in the Research Organization Registry (ROR), and found that the only two that have a parent relations to the NFDI (ror:05qj6w324) are NFDI4DS (ror:00bb4nn95) and MaRDI (ror:04ncnzm65). This felt strange to me, so I started looking around Wikidata to see if I could automatically make a curation sheet to send along to them. I found that Wikidata already… ## [Switching from using Tox to Just](https://cthoyt.com/2025/09/21/tox-to-just.html) _2025-09-21 · Charles Tapley Hoyt · Biopragmatics_ I became aware of just while watching Hynek’s second video on uv a few months ago. I immediately fell in love with its elegance and simplicity, so I have begun replacing task running in my repositories that relied on tox with just. This post gives a bit of background, context, and walks through making the switch on one of my repositories that has some annoying dependencies. ## [Exploring an unfamiliar SPARQL endpoint with the Bioregistry - a case study from NFDI4Culture](https://cthoyt.com/2025/09/11/nfdi4culture-prefix-validation.html) _2025-09-11 · Charles Tapley Hoyt · Biopragmatics_ Earlier this week at the sixth NFDI4Chem consortium meeting, Torsten Schrade from the NFDI4Culture consortium gave a lovely and whimsical talk entitled A Data Alchemist’s Journey through NFDI which explored ways that we might federate and jointly query both consortia’s knowledge via their respective SPARQL endpoints. This post is about the very first steps I took when looking into this new (to me)… ## [Validating the FAIRness of knowledge graphs and ontologies in RDF using the Bioregistry](https://cthoyt.com/2025/09/04/bioregistry-turtle-validation.html) _2025-09-04 · Charles Tapley Hoyt · Biopragmatics_ Using standard CURIE prefixes and URI prefixes in semantic web artifacts such as Resource Description Framework (RDF) promotes interoperability, enables reuse in downstream data integration, and makes data more FAIR. The Bioregistry defines a set of standard CURIE prefixes and URI prefixes against which RDF files can be validated/standardized. This blog post describes a new CLI tool bioregistry… ## [A historical analysis of ChEMBL](https://cthoyt.com/2025/08/26/chembl-history.html) _2025-08-26 · Charles Tapley Hoyt · Biopragmatics_ I’ve recently submitted an article to the Journal of Open Source Software (JOSS) describing chembl-downloader, a Python package for automating downloading and using ChEMBL data in a reproducible way. In this post, I use chembl-downloader to show how the number of compounds, assays, activities, and other entities in ChEMBL have changed over time. ## [Measuring the impact of the Bioregistry](https://cthoyt.com/2025/08/22/bioregistry-impact.html) _2025-08-22 · Charles Tapley Hoyt · Biopragmatics_ The Bioregistry is a database and toolchain for standardization of prefixes, CURIEs, and URIs that appear in linked (open) data. While I created it in 2019 as a component of PyOBO in order to support parsing database cross-references appearing in biomedical ontologies, it has since become an independent project with a community-driven governance model and much broader applications. This post is a… ## [The Bioregistry and BiomarkerKB](https://cthoyt.com/2025/08/22/bioregistry-and-biomarkerkb.html) _2025-08-22 · Charles Tapley Hoyt · Biopragmatics_ The Bioregistry is a community-driven registry of semantic spaces and their metadata. When I learned about BiomarkerKB at the International Society for Biocuration’s 18th Annual International Biocuration Conference, I was excited to curate new records (and prefixes) in the Bioregistry to cover BiomarkerKB’s semantic spaces on biomarkers. This post summarizes the discussions I’ve had with its… ## [Text-based embeddings of ontology terms](https://cthoyt.com/2025/08/04/ontology-text-embeddings.html) _2025-08-04 · Charles Tapley Hoyt · Biopragmatics_ The Ontology Lookup Service (OLS) is now indexing dense embeddings for ontology terms constructed from term labels, synonyms, and descriptions using LLMs. I maintain a Python client library for the OLS (ols-client) and was recently asked to implement a wrapper to the OLS’s API endpoint that exposes these embeddings. This post is a demo of how to use that code, and how I replicated the same… ## [Inference over Semantic Mappings with SeMRA](https://cthoyt.com/2025/04/28/inference-with-semra.html) _2025-04-28 · Charles Tapley Hoyt · Biopragmatics_ Assembling and inferring missing semantic mappings is a timely problem in biomedical data and knowledge integration. I’ve been developing the Semantic Mapping Assembler and Reasoner (SeMRA) as a generic toolkit for this. In this blog post, I highlight its inference capabilities. ## [I wish I could unpack Callables in Python type annotations](https://cthoyt.com/2025/04/23/python-wish-unpacking-callable.html) _2025-04-23 · Charles Tapley Hoyt · Biopragmatics_ Following the theme of my previous two posts, I’ve run into another typing conundrum where I want to unpack a pre-existing Callable into a class with Generic\[P, T\] where P is a parameter specification type (i.e. ParamsSpec) ## [Using ParamSpec with Python Generics](https://cthoyt.com/2025/04/22/python-generic-with-paramspec.html) _2025-04-22 · Charles Tapley Hoyt · Biopragmatics_ I’ve been working on applying strict static typing to my Python package class-resolver and ran into an interesting way of using generics in combination with parameter specification variables (i.e., ParamSpecs). ## [A dilemma with PEP-696 default generics when using optional static typing in Python](https://cthoyt.com/2025/04/19/python-default-typing-dilemma.html) _2025-04-19 · Charles Tapley Hoyt · Biopragmatics_ This post describes an issue I’ve had with writing correct types when using PEP-696 defaults in typing.TypeVar. I posted the exploration in a companion repository on GitHub. ## [The EFO\_ID column in ChEMBL’s drug indications table isn’t what you think it is](https://cthoyt.com/2025/04/17/chembl-indications-efo-exploration.html) _2025-04-17 · Charles Tapley Hoyt · Biopragmatics_ ChEMBL periodically curates clinical trial information into its DRUG\_INDICATION table. However, there’s some weird inconsistencies in the way it references disease concepts in external vocabularies. This blog post is an exploration of that table. ## [Data Modeling and Integration with Clinical Trials](https://cthoyt.com/2025/01/23/clinical-trials-data-modeling.html) _2025-01-23 · Charles Tapley Hoyt · Biopragmatics_ I’ve recently worked with clinical studies from ClinicalTrials.gov and other international registries. This post is a review on how to access data, a proposal for how it can be modeled using the Ontology for Biomedical Investigations (OBI), a proof-of-concept ontologization of ClinicalTrials.gov, and some insights into how this data can be integrated with other resources to address classical… ## [Books I Read in 2024](https://cthoyt.com/2025/01/18/books-in-2024.html) _2025-01-18 · Charles Tapley Hoyt · Biopragmatics_ Here’s the books I read in 2024. If I were Dudley Dursley, I’d be very upset that I read one fewer new book than in 2023. But then, I’d remember that I re-read a lot of Cosmere in 2024 to prepare for Wind and Truth, which was great. ## [Exploring Event Venues in Wikidata](https://cthoyt.com/2025/01/17/event-venues-in-wikidata.html) _2025-01-17 · Charles Tapley Hoyt · Biopragmatics_ I was working on making data about scholarly conferences more FAIR and a big question crossed my mind: what are all the conference venues? This post is about some queries I wrote for Wikidata, data issues I found, and a few drive-by curations that I did while looking for an answer, and my ideas for the future. ## [Notes on Open Source Funding](https://cthoyt.com/2024/12/03/open-source-funding.html) _2024-12-03 · Charles Tapley Hoyt · Biopragmatics_ This stub post contains my notes about funding for open source software. It doesn’t follow a story like a lot of my posts, and is more like an ever-evolving notes sheet. ## [Downloading Audio from Soundcloud](https://cthoyt.com/2024/12/03/opus-to-m4b.html) _2024-12-03 · Charles Tapley Hoyt · Biopragmatics_ Brandon Sanderson has been releasing a few chapters a week of his upcoming novel, Wind and Truth, on his publisher’s website leading up to its December 6th release. This includes the audiobook chapters, but they’re posted to Soundcloud and there’s no good way to listen at 1.6x speed. This post is a note sheet on how to download audio from Soundcloud and prepare it for my audiobook reader.