How to Clear Ghost Notifications on GitHub
Learn how to remove stuck GitHub ghost notifications using the REST API and curl. Fix phantom alerts and clean up your GitHub inbox fast.
Tender Is The Byte
Hi! I'm Ryan Moore, NBA fan & PhD candidate in Eric Wommack's viral ecology lab @ UD.
Latest posts
Bioinformatics by hand: Neighbor-joining trees
Bioinformatics algorithms can be intimidating, but many are much simpler than you think. In this post, we show how to calculate neighbor-joining trees "by hand" without any computational assistance beyond a spreadsheet program.
Generating Python bindings for OCaml with pyml_bindgen
This post provides an introduction to using pyml_bindgen, a command line application that generates Python bindings via pyml directly from OCaml value specifications.
An introduction to the re2 regular expression library for OCaml
In this post, I give an introduction and guide to help you get started using OCaml's re2 regular expression library, which provides OCaml bindings for Google's regular expression library, RE2.
Styling plots in base R graphics to match ggplot2 classic theme
The ggplot2 package makes some really nice looking plots. In this post, we give a step-by-step guide to styling plots, including moving the legend outside the plotting area, to match the ggplot2 classic theme using base R graphics.
Computational lab notebooks using git and git-annex
Managing a computational lab notebook can be tricky. Here I discuss a workflow and command line app for helping you to set up and manage your lab notebook with git and git-annex.
divnet-rs: A Rust implementation for DivNet
DivNet is an R package for estimating diversity when taxa occur in an ecological network. Here I talk about why you may want to use DivNet, introduce my Rust implementation of the algorithm, and compare its performance to the original R package.
A simple dashboard for COVID-19 case counts
Introducing the COVID-19 dashboard I made to compare case counts across U.S. counties.
COVID-19 Dashboard
Track and compare COVID-19 confirmed cases across US counties.
Virome Bytes: Microdiversity of Mediterranean Sea Viruses
In today's edition of Virome Bytes, Amelia Harrison discusses a paper looking at the microdiversity of Mediterranean Sea viruses!