تحلیل ژنومی خانواده ژنی WOX در کنجد (.Sesamum indicum L) و بررسی الگوی بیان برخی از ژن‌های آن تحت تنش‌ خشکی

Bahrami, H., Razmjoo, J. and Jafari, A.O. (2012). Effects of drought stress on germination and seedling growth of sesame cultivars (Sesamum indicum L.). International Journal of Agricultural Science, 2(5): 423–428.

Barcelos, E., De Almeida Rios, S., Cunha, R.N.V., Lopes, R., Motoike, S.Y., Babiychuk, E., Skirycz, A. and Kushnir, S. (2015). Oil palm natural diversity and the potential for yield improvement. Frontiers in Plant Science, 6: 190. https://doi.org/10.3389/fpls.2015.00190

Cao, X., Xie, H., Song, M., Lu, J., Ma, P., Huang, B., Wang, M., Tian, Y., Chen, F. and Peng, J. (2023). Cut‑dip‑budding delivery system enables genetic modifications in plants without tissue culture. The Innovation (Cambridge), 4(1): 100345. https://doi.org/10.1016/j.xinn.2022.100345

Chen, C., Chen, H., Zhang, Y., Thomas, H.R., Frank, M. H., He, Y. and Xia, R. (2020). TBtools: An integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13(8): 1194–1202. https://doi.org/10.1016/j.molp.2020.06.009

Czechowski, T., Stitt, M., Altmann, T., Udvardi, M. K. and Scheible, W. R. (2005). Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology, 139(1): 5–17. https://doi.org/10.1104/pp.105.063743

Dolzblasz, A., Nardmann, J., Clerici, E., Causier, B., Van der Graaff, E., Chen, J., Davies, B., Werr, W. and Laux, T. (2016). Stem cell regulation by Arabidopsis WOX genes. Molecular Plant, 9(7): 1028–1039. https://doi.org/10.1016/j.molp.2016.04.007

Dossa, K., Niang, M., Assogbadjo, A.E., Cissé, N. and Diouf, D. (2016). Whole genome homology-based identification of candidate genes for drought resistance in Sesamum indicum L. African Journal of Biotechnology, 15(28): 1464–1475. https://doi.org/10.5897/AJB2016.15420

Fahmideh, L., Delarampoor, M.A. and Fooladvand, Z. (2025). Study of MYB transcription factor gene expression in some bread wheat cultivars of Sistan region, Iran. Plant Genetic Research, 7(1): 181-196 (In Persian). http://doi: 20.1001.1.23831367.1399.7.1.6.3

Gallois, J.L., Nora, F.R., Mizukami, Y. and Sablowski, R. (2004). WUSCHEL induces shoot stem cell activity and developmental plasticity in the root meristem. Genes and Development, 18(4): 375–380. https://doi.org/10.1101/gad. 291204

Guo, J., Ling, H., Wu, Q., Xu, L. and Que, Y. (2014). The choice of reference genes for assessing gene expression in sugarcane under salinity and drought stresses. Scientific Reports, 4: 7042. https://doi.org/10.1038/srep07042

Haecker, A., Gross-Hardt, R., Geiges, B., Sarkar, A., Breuninger, H., Herrmann, M. and Laux, T. (2004). Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development, 131(3): 657–668. https://doi.org/10.1242/dev.00963

Hao, Q., Zhang, L., Yang, Y., Shan, Z. and Zhou, X.A. (2019). Genome‑wide analysis of the WOX gene family and function exploration of GmWOX18 in soybean. Plants, 8(7): 215. https://doi.org/10.3390/plants8070215

Hassanzadeh, M., Abdollahi Mandoulakani, B. and Mahmoodian, Z. (2025). Assessment of the relative expression of the transcription factors bHLH94, bZIP33 and WRKY46 in bread wheat cultivars under iron deficiency conditions. Plant Genetic Research, 12(1): 91-104 (In Persian). http://doi: 10.22034/pgr.2025.2069008.1012

Hassanzadeh, M., Asghari, A., Jamaati-e-Somarin, S.H., Saeidi, M., Zabihi-e-Mahmoodabad, R. and Hokmalipour, S. (2009). Effects of water deficit on drought tolerance indices of sesame (Sesamum indicum L.) genotypes in Moghan region. Research Journal of Environmental Sciences, 3(3): 116–121. https://doi.org/10.3923/rjes.2009.116.121

Holland, P.W.H. (2013). Evolution of homeobox genes. Wiley Interdisciplinary Reviews. Developmental Biology, 2(1): 31–45. https://doi.org/10.1002/wdev.78

Ikeuchi, M., Iwase, A., Ito, T., Tanaka, H., Favero, D. S., Kawamura, A., Sakamoto, S., Wakazaki, M., Tameshige, T., Fujii, H. and Laux, T. (2022). Wound-inducible WUSCHEL-RELATED HOMEOBOX 13 is required for callus growth and organ reconnection. Plant Physiology, 188(1): 425–441. https://doi.org/10.1093/plphys/kiab510

Jain, M., Nijhawan, A., Tyagi, A. K. and Khurana, J.P. (2006). Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochemical and Biophysical Research Communications, 345(2): 646–651. https://doi.org/10.1016/j.bbrc.2006.04.140

Jatav, K.S., Agarwal, R.M., Singh, R.P. and Shrivastava, M. (2021). Growth and yield responses of wheat (Triticum aestivum L.) to suboptimal water supply and different potassium doses. Journal of Functional and Environmental Botany, 2: 39–51.

Jha, P., Ochatt, S.J. and Kumar, V. (2020). WUSCHEL: A master regulator in plant growth signaling. Plant Cell Reports, 39(4): 431–444. https://doi.org/10.1007/s00299-020-02511-5

Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33(7): 1870–1874. https://doi.org/10.1093/molbev/msw054

Lian, G., Ding, Z., Wang, Q., Zhang, D. and Xu, J. (2014). Origins and evolution of WUSCHEL-related homeobox protein family in plant kingdom. The Scientific World Journal, 2014: 534140. https://doi.org/10.1155/2014/534140

Lin, H., Niu, L., McHale, N.A., Ohme‑Takagi, M., Mysore, K.S. and Tadege, M. (2013). Evolutionarily conserved repressive activity of WOX proteins mediates leaf blade outgrowth and floral organ development in plants. Proceedings of the National Academy of Sciences of the United States of America, 110(1): 366–371. https://doi.org/10.1073/pnas.1215376110

Lv, J., Feng, Y., Jiang, L., Zhang, G., Wu, T., Zhang, X., Xu, X., Wang, Y. and Han, Z. (2023). Genome‑wide identification of WOX family members in nine Rosaceae species and a functional analysis of MdWOX13‑1 in drought resistance. Plant Science, 328: 111564. https://doi.org/10.1016/j.plantsci.2023.111564

Ma, Y., Miotk, A. and Šutiković, Z. (2019). WUSCHEL acts as an auxin response rheostat to maintain apical stem cells in Arabidopsis. Nature Communications, 10: 5093. https://doi.org/10.1038/s41467-019-13074-9

Mukherjee, K., Brocchieri, L. and Bürglin, T. R. (2009). A comprehensive classification and evolutionary analysis of plant homeobox genes. Molecular Biology and Evolution, 26(12): 2775–2794. https://doi.org/10.1093/molbev/msp201

Nicot, N., Hausman, J. F., Hoffmann, L. and Evers, D. (2005). Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Journal of Experimental Botany, 56(421): 2907–2914. https://doi.org/10.1093/jxb/eri285

Oboulbiga, E.B., Douamba, Z., Compaoré-Sérémé, D., Semporé, J.N., Dabo, R. and Semde, Z. (2023). Physicochemical, potential nutritional, antioxidant and health properties of sesame seed oil: a review. Frontiers in Nutrition, 10: 1127926. https://doi.org/10.3389/fnut.2023.1127926

Ozkan, A. and Kulak, M. (2013). Effects of water stress on growth, oil yield, fatty acid composition, and mineral content of Sesamum indicum. Journal of Animal and Plant Sciences, 23(6): 1686–1690.

Padyab, S., Asghari Zakaria, R., Zare, N., Hosseinpour, N., Zaeifizadeh, M. and Sheikhzadeh, P. (2025). Evaluation of sesame (Sesamum indicum L.) genotypes’ response to drought stress. Environmental Stresses in Crop Sciences (In Press).

Pathak, N., Rai, A.K., Kumari, R., Thapa, A. and Bhat, K.V. (2014). Sesame crop: an underexploited oilseed holds tremendous potential for enhanced food value. Agricultural Sciences, 5(6): 519–529. https://doi.org/10.4236/as.2014.56054

Sarkar, A.K., Luijten, M., Miyashima, S., Lenhard, M., Hashimoto, T., Nakajima, K., Scheres, B., Heidstra, R. and Laux, T. (2007). Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature, 446(7137): 811–814. https://doi.org/10.1038/nature05703

Sun, J., Rao, Y., Le, M., Yan, T., Yan, X. and Zhou, H. (2010). Effects of drought stress on sesame growth and yield characteristics and comprehensive evaluation of drought tolerance. Chinese Journal of Oil Crop Sciences, 32(4): 525–533.

Ueda, M., Zhang, Z. and Laux, T. (2011). Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Developmental Cell, 20(2): 264–270. https://doi.org/10.1016/j.devcel.2011.01.009

Van der Graaff, E., Laux, T. and Rensing, S.A. (2009). The WUS homeobox-containing (WOX) protein family. Genome Biology, 10: 248. https://doi.org/10.1186/gb-2009-10-12-248

Vollbrecht, E., Veit, B., Sinha, N. and Hake, S. (1991). The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature, 350(6315): 241–243. https://doi.org/10.1038/350241a0

Wang, L., Yu, J., Li, D. and Zhang, X. (2015). Sinbase: An integrated database to study genomics, genetics and comparative genomics in Sesamum indicum. Plant and Cell Physiology, 56(11): e2. https://doi.org/10.1093/pcp/pcu175

Wu, C.C., Li, F. W. and Kramer, E.M. (2019). Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-related homeobox transcription factor family in plants. PLoS One, 14(10): e0223521. https://doi.org/10.1371/journal.pone.0223521

Wu, H., Qu, X., Dong, Z., Luo, L., Shao, C., Forner, J., Lohmann, J. U., Su, M., Xu, M., Liu, X., Zhu, L., Zeng, J., Liu, S., Tian, Z. and Zhao, Z. (2020). WUSCHEL triggers innate antiviral immunity in plant stem cells. Science, 370(6513): 227–231. https://doi.org/10.1126/science.abb7360

Yoshikawa, T., Tanaka, S. Y., Masumoto, Y., Nobori, N., Ishii, H., Hibara, K., Itoh, J., Tanisaka, T. and Taketa, S. (2016). Barley NARROW LEAFED DWARF1 encoding a WUSCHEL-RELATED HOMEOBOX 3 (WOX3) regulates the marginal development of lateral organs. Breeding Science, 66(3): 416–424. https://doi.org/10.1270/jsbbs.16019

Zabet, M., Barazandeh, F. and Samadzadeh, A. (2023). Evaluation of genetic structure of yield and its components in sesame using Hayman's numerical and graphical analysis in Birjand’s climate conditions. Plant Genetic Research, 10(1): 123-144 (In Persian). http://dx.doi.org/10.22034/pgr.10.1.8

Zhang, X., Zong, J., Liu, J., Yin, J. and Zhang, D. (2010). Genome-wide analysis of WOX gene family in rice, sorghum, maize, Arabidopsis and poplar. Journal of Integrative Plant Biology, 52(11): 1016–1026. https://doi.org/10.1111/j.1744-7909.2010.00982.x