Recent content on Joseph Szymborski has a blog.
"… all of this ended up in storage rooms, and everything became rotten and full of holes, and he himself finally turned into some kind of hole in humanity." ✪ ✪ “…все это сваливалось в кладовые, и все становилось гниль и прореха, и сам он обратился наконец в какую-то прореху на человечестве.” 
 — Google Gogol, Dead Souls Vol. 1, Chp. 6 
 In December 2009 ,…
While I was preparing to submit my most recent manuscript, I had to quickly add line numbers. It just took a couple of lines in the LaTeX source file, but I was worried that doing so would subtley mess up the document in some way that I’d only realize after it was too late. To ensure that the two documents were identical but for the line numbers, I just overlayed them using pdftk and the…
Prelude: Condorcet Voting 
 It all started when some of my friends wanted to organize a hangout. Some of us have known each other for close to 20 years, and as we’ve grown older its been harder to find time to spend with one another, so when we do, we try to make it count. 
 That’s why, when trying to decide on a fun activity, there’s a little bit of pressure to make sure…
I was avoiding getting out of bed when I came across a Mastodon post by @Foone that got me thinking. She had expressed a very reasonable thought, characteristic of her posts ✪ ✪ Ok, for the most part . You should consider buying her a coffee , her feed is great. , to include descriptions in the metadata of image so you wouldn’t have to write and rewrite alt texts every time you upload a…
I never knew whether to think I’m an incredibly fast or a remarkably slow writer. Some days I can write pages and pages of scientific prose in a single sitting, and other days getting out a sentence or two is a major accomplishment. People in my life know better to ask me when I’ll be done writing something, as the answer is typically “I have no idea”. 
 Over the years,…
This is going to be a quick post, mostly spurred-on by @boris@cosocial.ca ’s excellent suggestion. 
 This blog now has a comment section, and it’s powered by Mastodon , a federated micro-blog social network ✪ ✪ Here’s a 2 minute video introducing Mastodon if you have more questions. . 
 How does it work? 
 
 I make a post on cosocial.ca 
 People can reply to…
Motivation 
 I have needs. Very specific needs. Namely, I want: 
 
 To hash a corpus of English words, individually 
 …using a cryptographic hash 
 …quickly 
 …in Python. 
 
 Putting aside that this is a strange thing to want to do, I’ve compiled a few benchmarks to help me chose the best function for my purposes. I’ve found plenty…
Poster 
 Download the poster we presented at CSHL 2023 here: ⇓ poster.pdf (1.6 MB) 
 
 Poster References 
 
 Park Y, Marcotte EM. Flaws in evaluation schemes for pair-input computational predictions. Nat Methods. 2012 Dec;9(12):1134–6. DOI: 10.1038/nmeth.2259 
 Merity S, Keskar NS, Socher R. Regularizing and Optimizing LSTM Language Models. arXiv:170802182 [cs] [Internet].…
Presentation 
 
 A pre-recorded version of this presentation can be downloaded here: 
 ▶ rapppid_1080p.webm (125 MB) 
 ▶ rapppid_720p.webm (64 MB) 
 ▶ rapppid_480p.webm (33 MB) 
 You can download the slides in PDF format here: 
 ⇓ 2022_ISMB_RAPPPID.pdf (9 MB) 
 Poster 
 You can download the poster we presented at ISMB 2022 here: ⇓ poster.pdf (3 MB) 
 
…
Presentation 
 You can preview the presentation on Speakerdeck.com . 
 
 You can also download the slides in PDF format here: 
 ⇓ 2022_BIRS_RAPPPID.pdf (19.5 MB) 
 A recording of the presentation can be viewed on the BIRS website or downloaded from here: 
 ▶ 2022_BIRS_RAPPPID.webm (52.4 MB) 
 References 
 You can find the references in this presentation within this…