The Gene Regulation Landscape
A compact map of how cells decide which genes become proteins
Jérémie
My website and blog.
Latest posts
Finishing the PhD
2.5 years, two labs, one foundation model, and a defense. Here is what I learned.
How I managed thousands of datasets to build the scPRINT family of scRNA-seq foundation models
Short stories about my professional experiences.
VCC starter pack
If you do data science and machine learning, here is everything you need to know to get started on the Arc virtual cell challenge.
A year in the PhD
What has happened in the last year? How does it feel like to be a PhD student?
What are large cell models?
A few thoughts on the term large cell models that I am using in my recent paper and my posts
Ancestry Bias in CRISPR Screens
How we discovered ancestry biases in CRISPR screens and published in Nature Communications
Managing GRNs and What They Mean
Some thoughts on Gene Regulatory Networks and their meaning in biology
AUPRC vs AP: Evaluating Binary Classification
A deep dive into classification metrics and their nuances
Enrichr, Prerank, GSEA or ssGSEA?
A quick reminder of when to use which enrichment analysis tool