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Jacob Silterra

Recent content on Jacob Silterra

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Latest posts

Benchmarking Protein Ensemble Generators

Generative models for protein conformational ensembles are arriving monthly, but the field has no neutral cross-model comparison. A tour of why ensemble evaluation is hard and where the methods landscape sits today.

From One Algorithm to Five: Rebuilding Parametric t-SNE as Parametric DR

Rebuilding parametric_tsne from scratch as parametric_dr: a PyTorch library providing parametric neural network implementations of five dimensionality reduction methods under a single API.

Projects

Selected projects and open-source contributions