tellurium.analogmachine.org

Funded by NIGMS: R01-GM123032 and previously from R01-GM081070

A Python Environment for Reproducible Dynamical Modeling of Biological Networks

Tellurium is a Python package that knits together a variety of important packages for carrying out simulation studies in systems biology and other disciplines. 

  • Tellurium provides an interface to the powerful high-performance libroadrunner simulation engine. 

  • Tellurium allows you to build your models using an easy-to-use human-readable version of SBML called Antimony (see also https://github.com/sys-bio/antimony). Antimony Tutorial

  • Tellurium supports all the major standards such as SBML, SED-ML, and COMBINE archives. 

  • Tellurium can be used via GUI front-ends such as Spyder,  PyCharm, or Jupyter Notebooks (including CoLab) with support for advanced productivity and interactive editing features 

  • Installation is via standard pip installation. We also provide a one-click installer for Windows uses which provides a complete environment for systems biology modeling 

Tellurium runs on Windows, Mac OS and Linux. 

Want to know more? Visit the documentation site at:
Documentation

You can join discussions at:

https://github.com/sys-bio/tellurium/discussions

Tellurium relies on open-source contributions from many people. See the acknowledgment page for details.

New contributions are always welcome, see the GitHub page.

The Tellurium, Antimony, and libRoadRunner project were funded by NIH/NIGMS (GM081070). Previous funding has come from DARPA, DOE, and the NSF.

Tellurium is licensed under the Apache 2.0 license. Constituent packages have various licenses. 

Recent Publications:

  1. Tellurium: An extensible Python-based modeling environment for systems and synthetic biology

  2. Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology

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