@tskit-dev

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Population-scale Ancestral Recombination Graph (ARG) library

Python 189 84
Simulate ARGs and genomic sequence data using population genetic models

Python 217 92
Infer a tree sequence from genetic variation data.

Python 65 18
Infer the age of ancestral nodes in a tree sequence.

Python 27 12
A set of tutorials for msprime and tskit.

Jupyter Notebook 21 19
Gzip-like compression for tskit tree sequences

Python 5 7

Showing 10 of 30 repositories

pyslim Public
Tools for dealing with tree sequences coming to and from SLiM.

tskit-dev/pyslim's past year of commit activity

Python
28
MIT
23 33 1
Updated Aug 17, 2026
tskit Public
Population-scale Ancestral Recombination Graph (ARG) library

tskit-dev/tskit's past year of commit activity
tskit-dev/tskit-site's past year of commit activity

HTML
0 6 23 0
Updated Aug 17, 2026
kastore Public
The key-array store for read-only numerical data.

tskit-dev/kastore's past year of commit activity

C
2
MIT
9 2 0
Updated Aug 14, 2026
msprime Public
Simulate ARGs and genomic sequence data using population genetic models

tskit-dev/msprime's past year of commit activity
.github Public
Defaults for github shared across tskit-dev repositories

tskit-dev/.github's past year of commit activity

0 3 2 0
Updated Aug 14, 2026
tskit-rust Public
Rust bindings for the tskit library

tskit-dev/tskit-rust's past year of commit activity

C
18
MIT
5 5 5
Updated Aug 1, 2026
sc2ts Public
ARG inference and analysis utilities for pandemic-scale SARS-CoV-2 data

tskit-dev/sc2ts's past year of commit activity

Python
6
GPL-3.0
4 25 3
Updated Jul 30, 2026
tskit-dev/tskit-paper's past year of commit activity

Python
3 48 0 0
Updated Jul 15, 2026
tszip Public
Gzip-like compression for tskit tree sequences

tskit-dev/tszip's past year of commit activity

Python
5
MIT
7 3 0
Updated Jun 30, 2026

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