/projectnb/bohland/HCP/
code/
# see each script for more detailed documentation
      hcp_analysis_utils.py
      # contains functions that perform preprocessing
      svd_dtseries.sh
      # calls svd_dtseries.py with supplied args
      svd_dtseries.py
      # computes svd of a partition in $HCP/data/id_partitions.txt
      svd_dtseries_parallel.sh
      # parallelizes svd_dtseries.sh across several partitions
      # in accordance with supplied args
data/
      err/
      # stderr of each array job (of qsub)
      id_partitions.txt
      # list of subjects partitioned based on args supplied to svd_dtseries_parallel.sh
      # where each row is a partition
      imgs/
      # noise mask imgs (saved as .nii.gz), if saved during svd computation
      # resampled parcellation imgs (aparc+aseg; saved as .nii.gz)
      out/
      # stdout of each array job (of qsub)
      plots/
      # preprocessing plots, if saved during svd computation
      # one per subject
      svds/
      # computed svds, saved as .mat