GitHub

Yo! 👋

Hello, I'm Robert Petit (puh-teet, not pet-it)! I currently work as a bioinformatician in the Wyoming Public Health Laboratory. In my personal time I am continuing to develop Bactopia, a bacterial genome analysis pipeline.

  • 💻 Things I use daily: Nextflow, Conda, Unix, Python
  • 💬 Ask me about: Bactopia and Bioconda
  • ⚡ Fun fact: I'm the third Robert, in a line of Bobs
  • 🔥 Hot take: Pecan is pronounced PEE-CAN!

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  1. A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 522 81

  2. 🐪Classification through yAML Heuristic Mapping Protocol 🐪

    Python 9 2

  3. 🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

    Perl 136 13

  4. Download FASTQ files from SRA or ENA repositories.

    Python 404 32

  5. Output FASTQ summary statistics in JSON format

    C++ 29 2

  6. A tool for typing SCCmec cassettes in assemblies

    Python 13

Read the original on github.com ↗