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R Shiny

Web applications built in R using Shiny.
shiny-flyer Create flyers for workshops
shiny-rnaseq-power Run power analyses for RNASeq experiments
shiny-nametagger Create name tags for clip-on badges
shiny-doorsign Create door signage for office
shiny-planner A planner calendar
shiny-certificate*/certexpress Generate course certificates
shiny-valkompass Runs PCA and plots your views on Swedish political latent space
pophelperShiny Visualise admixture proportions

Quarto and Rmarkdown
quarto-toastui Quarto extension to add toastui calendar component to HTML
quarto-revealjs-pointer Quarto extension to add trailing pointer to revealjs presentation
quarto-leaflet Quarto extension to create leaflet maps
quarto-typst-flyer Quarto extension using Typst to create flyer
quarto-particles Quarto extension to add particles.js
quarto-typst-nametag Quarto extension using Typst to create nametags
quarto-typst-certificate Quarto extension using Typst to create certificates
quarto-team Quarto extension to add a team layout
quarto-accordion Quarto extension to add accordions
specky Quarto website template for courses
quarto-revealjs-header Quarto extension to add logos to revealjs presentation
abstrave Quarto website template for courses
folium Quarto website template for NBIS projects
folium-webpage Quarto single page template for NBIS projects
minty Rmarkdown report and xaringan presentation template for NBIS projects
workshop-template-rmd-ga RMarkdown workshop website template with github actions
raukrtemplate Rmarkdown report and presentation template used for RaukR workshop 2018-2022

R packages
renvtools Read, write and compare renv lock files
plummy ggplot2 custom themes
easyshiny Generate shiny app from single-cell transcriptomics data
pixture HTML image gallery with lightbox using htmlwidgets
pophelper Analyse and visualise admixture proportions
iscrape Instagram scrapper

Teaching
raukr-2026 RaukR 2026: Data Science With R*
raukr-2025 RaukR 2025: R Beyond The Basics*
raukr-2024 RaukR 2024: Advanced R for Bioinformatics*
workshop-scRNAseq Single cell RNAseq analysis*
workshop-ngsintro Introduction to Bioinformatics using NGS data*
workshop-rnaseq Analyses of Bulk RNAseq data*
raukr-2023 RaukR 2023: Advanced R for Bioinformatics*
RaukR-2022 RaukR 2022: Advanced R for Bioinformatics*
RaukR-2021 RaukR 2021: Advanced R for Bioinformatics*
course-r 2 day R course for beginners
RaukR-2019 RaukR 2019: Advanced R for Bioinformatics*
RaukR-2018 RaukR 2018: Advanced R for Bioinformatics*
workshop-r 5 day R course for beginners*

Other
SensorScope Film and camera sensor formats
Fontcheck Interactive font preview
SeqHub Knowledgebase for RNASeq and scRNASeq
r-calendar Photo calendar for print using R
sk Skandia mortgage interest rates interactive plot
docker-zellkonverter Docker image to run zellkonverter

*Hosted on organisation account.

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  1. An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

    R 151 39

  2. Quarto website template for courses

    SCSS 12 2

  3. Quarto website template for courses

    SCSS 7 2

  4. HTML Image Gallery in R with responsive layouts and lightbox

    JavaScript 21 4

  5. A quarto website template for NBIS project reports

    SCSS 4 1

  6. RaukR • Data Science with R

    SCSS

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