Computational Environment
All processing and analysis scripts were performed using the conda environment specified in environment.yml.
To build and activate this environment run:
conda env create --force --file environment.yml conda activate sourmash_resources
Plots
compute
index
search
gather
lca search
lca gather
compare
Resources (for latest)
| command | s | h:m:s | max_rss | max_vms | max_uss | max_pss | io_in | io_out | mean_load |
|---|---|---|---|---|---|---|---|---|---|
| compute | 28.9644 | 0:00:28 | 25.17 | 452.46 | 21.90 | 22.77 | 69.74 | 0.00 | 51.69 |
| search | 6.5236 | 0:00:06 | 240.85 | 668.89 | 237.73 | 238.55 | 3515.33 | 0.00 | 86.17 |
| gather | 28.4542 | 0:00:28 | 2198.07 | 2971.91 | 2194.98 | 2195.84 | 1406.25 | 0.00 | 54.06 |
| lca_search | 41.7801 | 0:00:41 | 3590.98 | 4018.90 | 3587.96 | 3588.79 | 261.56 | 0.00 | 36.98 |
| lca_gather | 43.2280 | 0:00:43 | 3590.91 | 4018.90 | 3587.92 | 3588.76 | 261.56 | 0.00 | 35.60 |
| compare | 2.4714 | 0:00:02 | 48.12 | 508.76 | 45.02 | 45.86 | 31.80 | 0.00 | 62.34 |
| index | 18.9217 | 0:00:18 | 526.86 | 954.88 | 523.93 | 524.76 | 242.65 | 171.25 | 79.49 |