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  1. Split combined-sample VCF stream into single-sample VCF files

    C 7 1

  2. Pipeline for calling mCAs and LoY with WGS data from the TOPMed project

    Shell 4

  3. High-performance, memory-efficient bioinformatics library

    C 3

  4. Haplohseq analysis of TOPMed data

    Shell 3 1

  5. 100% C Differential Analysis Tool

    Shell 3

  6. Generate .hap file from VCF for haplohseq

    Makefile 2

Repositories

Showing 10 of 21 repositories

  • fasda Public

    100% C Differential Analysis Tool

    auerlab/fasda's past year of commit activity

    Shell

    3

    BSD-2-Clause

    0 0 0

    Updated Aug 14, 2026

  • Optic-Regen Public

    Reboot of Andrea Rau's Optic Regen 2019 for comparisons with CNC-EMDiff

    auerlab/Optic-Regen's past year of commit activity

    Shell

    0 0 0 0

    Updated Apr 18, 2026

  • peak-classifier Public

    Classify ChIP/ATAC-Seq peaks based on features provided in a GFF

    auerlab/peak-classifier's past year of commit activity

    C

    0

    BSD-2-Clause

    0 0 0

    Updated Apr 14, 2026

  • basic-stats Public

    Command-line tool to perform basic statistics on tabular data

    auerlab/basic-stats's past year of commit activity

    C

    2

    BSD-2-Clause

    0 0 0

    Updated Apr 14, 2026

  • vcf2hap Public

    Generate .hap file from VCF for haplohseq

    auerlab/vcf2hap's past year of commit activity

    Makefile

    2

    BSD-2-Clause

    0 0 0

    Updated Apr 14, 2026

  • ad2vcf Public

    Add allelic depth info from a SAM stream to a VCF file

    auerlab/ad2vcf's past year of commit activity

    C

    1

    BSD-2-Clause

    2 0 0

    Updated Apr 14, 2026

  • vcf-split Public

    Split combined-sample VCF stream into single-sample VCF files

    auerlab/vcf-split's past year of commit activity

    C

    7

    BSD-2-Clause

    1 0 0

    Updated Apr 14, 2026

  • auerlab/fastq-trim's past year of commit activity

    C

    2

    BSD-2-Clause

    0 0 0

    Updated Apr 14, 2026

  • auerlab/microsynteny-tools's past year of commit activity

    C

    0

    BSD-2-Clause

    0 0 0

    Updated Apr 14, 2026

  • auerlab/biolibc-tools's past year of commit activity

    C

    2

    BSD-2-Clause

    0 0 0

    Updated Apr 14, 2026

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