GitHub

Hi, I'm Maarten van der Sande 👋

I am a PhD student computational biology at the RIMLS Nijmegen.

              

Software

Star on GitHub seq2science: Automated preprocessing of Next-Generation Sequencing data.

Star on GitHub qnorm: Fast-ish (and correct!) quantile normalization in Python.

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  1. Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

    Python 169 28

  2. Free-surface implementation of lattice boltzmann in Python.

    Python 32 6

  3. Fast-ish (and correct!) quantile normalization in Python.

    Python 32 3

  4. Basic implementation of smoothed-particle hydrodynamics (SPH) in Python.

    Python 33 10

  5. My PhD thesis

    TeX

Read the original on github.com ↗