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SCimplify_for_Seurat fails with high-cardinality metadata

Status: Open.

#38 In GfellerLab/SuperCell;

· oconntk opened

on Apr 13, 2026

SCimplify_for_Seurat() hangs if nonexistent reduction is provided

Status: Open.

#37 In GfellerLab/SuperCell;

· Nick-Eagles opened

on Mar 31, 2026

Aggregating fragments from a multi-sample object

Status: Open.

#36 In GfellerLab/SuperCell;

· Nick-Eagles opened

on Mar 31, 2026

supercell_purity entropy measure

Status: Open.

#31 In GfellerLab/SuperCell;

· simozhou opened

on Jun 16, 2025

Error in ge %*% M.AV : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 Calls: makeSeuratMC -> supercell_GE -> %*% -> %*% In addition: Warning messages: 1: In asMethod(object) : sparse->dense coercion: allocating vector of size 19.0 GiB 2: In asMethod(object) : sparse->dense coercion: allocating vector of size 2.5 GiB Execution halted

Status: Open.

#29 In GfellerLab/SuperCell;

· christophechu opened

on Sep 23, 2024